Results 21 - 40 of 232 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21427 | 5' | -60 | NC_004812.1 | + | 129644 | 0.66 | 0.779085 |
Target: 5'- cUCGUCgGAGaggGCGGccGCCaGGCGGCGc -3' miRNA: 3'- uAGCAG-CUCa--CGCU--CGGcCUGCCGCc -5' |
|||||||
21427 | 5' | -60 | NC_004812.1 | + | 99234 | 0.66 | 0.779085 |
Target: 5'- cGUCGgCGGGgGCGggggccguccgGGCCGGAggcacgcacCGGCGGc -3' miRNA: 3'- -UAGCaGCUCaCGC-----------UCGGCCU---------GCCGCC- -5' |
|||||||
21427 | 5' | -60 | NC_004812.1 | + | 106704 | 0.66 | 0.779085 |
Target: 5'- -gCGUCGGGccccgGgGGGCCcucggggucGGCGGCGGg -3' miRNA: 3'- uaGCAGCUCa----CgCUCGGc--------CUGCCGCC- -5' |
|||||||
21427 | 5' | -60 | NC_004812.1 | + | 86363 | 0.66 | 0.779085 |
Target: 5'- -cCGggCG-GUGCGcGCUgGGugGGCGGa -3' miRNA: 3'- uaGCa-GCuCACGCuCGG-CCugCCGCC- -5' |
|||||||
21427 | 5' | -60 | NC_004812.1 | + | 4135 | 0.66 | 0.779085 |
Target: 5'- cUCGUCgGAGaggGCGGccGCCaGGCGGCGc -3' miRNA: 3'- uAGCAG-CUCa--CGCU--CGGcCUGCCGCc -5' |
|||||||
21427 | 5' | -60 | NC_004812.1 | + | 65753 | 0.66 | 0.779085 |
Target: 5'- cUCGUCGAGgagcaccGCGAcuacgugcGCCGGcgcCGGCGc -3' miRNA: 3'- uAGCAGCUCa------CGCU--------CGGCCu--GCCGCc -5' |
|||||||
21427 | 5' | -60 | NC_004812.1 | + | 63208 | 0.66 | 0.779085 |
Target: 5'- ---aUCGAGUGCaAGgCGGGCGG-GGa -3' miRNA: 3'- uagcAGCUCACGcUCgGCCUGCCgCC- -5' |
|||||||
21427 | 5' | -60 | NC_004812.1 | + | 30584 | 0.66 | 0.778191 |
Target: 5'- cUCGcagaaGAGcGCccgccggGGGUCGGGCGGCGGg -3' miRNA: 3'- uAGCag---CUCaCG-------CUCGGCCUGCCGCC- -5' |
|||||||
21427 | 5' | -60 | NC_004812.1 | + | 60332 | 0.66 | 0.776401 |
Target: 5'- -cCGUCGAGcaucgugaaggugaUGUcGGCCGGcAgGGCGGc -3' miRNA: 3'- uaGCAGCUC--------------ACGcUCGGCC-UgCCGCC- -5' |
|||||||
21427 | 5' | -60 | NC_004812.1 | + | 38548 | 0.66 | 0.775504 |
Target: 5'- gGUCGgggcgcgaagcugCGGGcccGCGGGCCgggagcgggGGugGGCGGg -3' miRNA: 3'- -UAGCa------------GCUCa--CGCUCGG---------CCugCCGCC- -5' |
|||||||
21427 | 5' | -60 | NC_004812.1 | + | 7647 | 0.66 | 0.775504 |
Target: 5'- gGUCGgggcgcgaagcugCGGGcccGCGGGCCgggagcgggGGugGGCGGg -3' miRNA: 3'- -UAGCa------------GCUCa--CGCUCGG---------CCugCCGCC- -5' |
|||||||
21427 | 5' | -60 | NC_004812.1 | + | 114087 | 0.66 | 0.770097 |
Target: 5'- -gCGUgGuGUGcCGGGgCGGACGGaUGGg -3' miRNA: 3'- uaGCAgCuCAC-GCUCgGCCUGCC-GCC- -5' |
|||||||
21427 | 5' | -60 | NC_004812.1 | + | 71232 | 0.66 | 0.770097 |
Target: 5'- -cCG-CGAGgGCGcGGCgGgGACGGCGGc -3' miRNA: 3'- uaGCaGCUCaCGC-UCGgC-CUGCCGCC- -5' |
|||||||
21427 | 5' | -60 | NC_004812.1 | + | 92913 | 0.66 | 0.770097 |
Target: 5'- --gGUCGAGgauccCGAGgCGGA-GGCGGg -3' miRNA: 3'- uagCAGCUCac---GCUCgGCCUgCCGCC- -5' |
|||||||
21427 | 5' | -60 | NC_004812.1 | + | 131063 | 0.66 | 0.770097 |
Target: 5'- cGUCGUCGGGcuccuCGGGguCCGGcguucGCGGCGGc -3' miRNA: 3'- -UAGCAGCUCac---GCUC--GGCC-----UGCCGCC- -5' |
|||||||
21427 | 5' | -60 | NC_004812.1 | + | 5555 | 0.66 | 0.770097 |
Target: 5'- cGUCGUCGGGcuccuCGGGguCCGGcguucGCGGCGGc -3' miRNA: 3'- -UAGCAGCUCac---GCUC--GGCC-----UGCCGCC- -5' |
|||||||
21427 | 5' | -60 | NC_004812.1 | + | 63031 | 0.66 | 0.764649 |
Target: 5'- uUCGucacauUCGGGUgguaccgccuggggcGCGGGCgGGACGGCa- -3' miRNA: 3'- uAGC------AGCUCA---------------CGCUCGgCCUGCCGcc -5' |
|||||||
21427 | 5' | -60 | NC_004812.1 | + | 141522 | 0.66 | 0.760995 |
Target: 5'- -gCGcUCGGGcuCGAGCCGGcggGCGGCGa -3' miRNA: 3'- uaGC-AGCUCacGCUCGGCC---UGCCGCc -5' |
|||||||
21427 | 5' | -60 | NC_004812.1 | + | 152621 | 0.66 | 0.760995 |
Target: 5'- -gCGgCGAgagcagGUGCccGGGCCGGcgcGCGGCGGg -3' miRNA: 3'- uaGCaGCU------CACG--CUCGGCC---UGCCGCC- -5' |
|||||||
21427 | 5' | -60 | NC_004812.1 | + | 121720 | 0.66 | 0.760995 |
Target: 5'- -gCGgCGAgagcagGUGCccGGGCCGGcgcGCGGCGGg -3' miRNA: 3'- uaGCaGCU------CACG--CUCGGCC---UGCCGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home