miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21428 3' -61.1 NC_004812.1 + 149293 0.66 0.721881
Target:  5'- aGGCaaACCGAGgagaGGGCCG--GGCGAc- -3'
miRNA:   3'- gCCG--UGGCUCa---CCCGGCagUCGCUca -5'
21428 3' -61.1 NC_004812.1 + 100659 0.66 0.721881
Target:  5'- -cGCGCCGGGccGGGCC-UCGGCGucGGg -3'
miRNA:   3'- gcCGUGGCUCa-CCCGGcAGUCGC--UCa -5'
21428 3' -61.1 NC_004812.1 + 148324 0.66 0.721881
Target:  5'- cCGGCGCagauCGAcGUGGGCCugguaucUCGGCGAu- -3'
miRNA:   3'- -GCCGUG----GCU-CACCCGGc------AGUCGCUca -5'
21428 3' -61.1 NC_004812.1 + 32475 0.66 0.721881
Target:  5'- aGGCGCgUGAGgcgcGGcCCGUCGGCGGcGUa -3'
miRNA:   3'- gCCGUG-GCUCac--CC-GGCAGUCGCU-CA- -5'
21428 3' -61.1 NC_004812.1 + 71215 0.66 0.721881
Target:  5'- aGGCGgCGAGcGGGCgG-CcGCGAGg -3'
miRNA:   3'- gCCGUgGCUCaCCCGgCaGuCGCUCa -5'
21428 3' -61.1 NC_004812.1 + 118392 0.66 0.721881
Target:  5'- aGGCaaACCGAGgagaGGGCCG--GGCGAc- -3'
miRNA:   3'- gCCG--UGGCUCa---CCCGGCagUCGCUca -5'
21428 3' -61.1 NC_004812.1 + 13550 0.66 0.721881
Target:  5'- uCGGUcucucucucACCGAGggggGGcGCCGg-AGCGAGUu -3'
miRNA:   3'- -GCCG---------UGGCUCa---CC-CGGCagUCGCUCA- -5'
21428 3' -61.1 NC_004812.1 + 39535 0.66 0.721881
Target:  5'- gGGCugCucgacgGGGUgcGGGCCGUC-GCGGGc -3'
miRNA:   3'- gCCGugG------CUCA--CCCGGCAGuCGCUCa -5'
21428 3' -61.1 NC_004812.1 + 52591 0.66 0.719973
Target:  5'- aCGGCcCCGAGgccguacgccacGGGCCGccUCAGCcAGg -3'
miRNA:   3'- -GCCGuGGCUCa-----------CCCGGC--AGUCGcUCa -5'
21428 3' -61.1 NC_004812.1 + 155401 0.66 0.718063
Target:  5'- gGGgGCCGGGccGGGCCGggcgugguggcggCGGCGAc- -3'
miRNA:   3'- gCCgUGGCUCa-CCCGGCa------------GUCGCUca -5'
21428 3' -61.1 NC_004812.1 + 29893 0.66 0.718063
Target:  5'- gGGgGCCGGGccGGGCCGggcgugguggcggCGGCGAc- -3'
miRNA:   3'- gCCgUGGCUCa-CCCGGCa------------GUCGCUca -5'
21428 3' -61.1 NC_004812.1 + 53555 0.66 0.716149
Target:  5'- gGGCGCCGAGgugcuccgGGagcacgcguacagccGCCGUC-GUGAGa -3'
miRNA:   3'- gCCGUGGCUCa-------CC---------------CGGCAGuCGCUCa -5'
21428 3' -61.1 NC_004812.1 + 30532 0.66 0.712314
Target:  5'- aGGCGCCGGG-GGGCa---GGCGcAGg -3'
miRNA:   3'- gCCGUGGCUCaCCCGgcagUCGC-UCa -5'
21428 3' -61.1 NC_004812.1 + 50194 0.66 0.712314
Target:  5'- cCGGCGCaGAGgaacgccgGGGCCGUgAGgcCGAGc -3'
miRNA:   3'- -GCCGUGgCUCa-------CCCGGCAgUC--GCUCa -5'
21428 3' -61.1 NC_004812.1 + 153246 0.66 0.712314
Target:  5'- gGGCGCgGGGUucccggcggGGGCCGgggcGCGGGg -3'
miRNA:   3'- gCCGUGgCUCA---------CCCGGCagu-CGCUCa -5'
21428 3' -61.1 NC_004812.1 + 67272 0.66 0.712314
Target:  5'- gGGCG-CGGGUGGGUCcaucguacgCGGCGGGg -3'
miRNA:   3'- gCCGUgGCUCACCCGGca-------GUCGCUCa -5'
21428 3' -61.1 NC_004812.1 + 155015 0.66 0.712314
Target:  5'- gGGCGCCcgGAGgcggGGaGCCGUgCGGgGGGg -3'
miRNA:   3'- gCCGUGG--CUCa---CC-CGGCA-GUCgCUCa -5'
21428 3' -61.1 NC_004812.1 + 29507 0.66 0.712314
Target:  5'- gGGCGCCcgGAGgcggGGaGCCGUgCGGgGGGg -3'
miRNA:   3'- gCCGUGG--CUCa---CC-CGGCA-GUCgCUCa -5'
21428 3' -61.1 NC_004812.1 + 122345 0.66 0.712314
Target:  5'- gGGCGCgGGGUucccggcggGGGCCGgggcGCGGGg -3'
miRNA:   3'- gCCGUGgCUCA---------CCCGGCagu-CGCUCa -5'
21428 3' -61.1 NC_004812.1 + 19782 0.66 0.712314
Target:  5'- aCGcGCGCCGGGgcgaagaGGGCCGcUCGGCc--- -3'
miRNA:   3'- -GC-CGUGGCUCa------CCCGGC-AGUCGcuca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.