miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21428 5' -48.8 NC_004812.1 + 87037 0.65 0.998687
Target:  5'- -cGCUCGga-GGCGGCugcggcgcggCCGGCGc -3'
miRNA:   3'- aaUGAGUaaaCUGCCGuaaa------GGCCGU- -5'
21428 5' -48.8 NC_004812.1 + 74866 0.66 0.998214
Target:  5'- -aGCgccgCAg--GGCGGCcg-UCCGGCGc -3'
miRNA:   3'- aaUGa---GUaaaCUGCCGuaaAGGCCGU- -5'
21428 5' -48.8 NC_004812.1 + 54486 0.66 0.998214
Target:  5'- cUACgaCAgc-GACGGCGgggCCGGCGg -3'
miRNA:   3'- aAUGa-GUaaaCUGCCGUaaaGGCCGU- -5'
21428 5' -48.8 NC_004812.1 + 22561 0.66 0.99785
Target:  5'- -gACUCGag-GuCGGCcucgGUUUCCGGCu -3'
miRNA:   3'- aaUGAGUaaaCuGCCG----UAAAGGCCGu -5'
21428 5' -48.8 NC_004812.1 + 133573 0.67 0.996936
Target:  5'- -aGCUC----GGCGGCGUccugCCGGCGg -3'
miRNA:   3'- aaUGAGuaaaCUGCCGUAaa--GGCCGU- -5'
21428 5' -48.8 NC_004812.1 + 4229 0.67 0.996371
Target:  5'- -gGCUCGgg-GGCGGCGgcggCGGCGg -3'
miRNA:   3'- aaUGAGUaaaCUGCCGUaaagGCCGU- -5'
21428 5' -48.8 NC_004812.1 + 147984 0.67 0.996371
Target:  5'- gUGCUCAUggcgccgGGCGGCGgggCCgagGGCGa -3'
miRNA:   3'- aAUGAGUAaa-----CUGCCGUaaaGG---CCGU- -5'
21428 5' -48.8 NC_004812.1 + 85322 0.67 0.995722
Target:  5'- -gGCUCGguggcgccUGGCGGCGacUUUCGGCGg -3'
miRNA:   3'- aaUGAGUaa------ACUGCCGUa-AAGGCCGU- -5'
21428 5' -48.8 NC_004812.1 + 64170 0.67 0.994657
Target:  5'- -gGCUCcgcgcgggagGGCGGCGggggCCGGCAc -3'
miRNA:   3'- aaUGAGuaaa------CUGCCGUaaa-GGCCGU- -5'
21428 5' -48.8 NC_004812.1 + 76509 0.67 0.99414
Target:  5'- -gGCUCAg--GGCGGCGacggugUCGGCGa -3'
miRNA:   3'- aaUGAGUaaaCUGCCGUaaa---GGCCGU- -5'
21428 5' -48.8 NC_004812.1 + 126635 0.67 0.99414
Target:  5'- ---------cGACGGCAgccUCCGGCAg -3'
miRNA:   3'- aaugaguaaaCUGCCGUaa-AGGCCGU- -5'
21428 5' -48.8 NC_004812.1 + 72099 0.68 0.992117
Target:  5'- -aGCUCGUUUgGGCGGgGgcuggggUCCGGUg -3'
miRNA:   3'- aaUGAGUAAA-CUGCCgUaa-----AGGCCGu -5'
21428 5' -48.8 NC_004812.1 + 124980 0.68 0.992117
Target:  5'- -aGCUCcu---GCGGCGcUUUCCGGCGc -3'
miRNA:   3'- aaUGAGuaaacUGCCGU-AAAGGCCGU- -5'
21428 5' -48.8 NC_004812.1 + 145344 0.68 0.990916
Target:  5'- gUGCUCGg--GGCGGCcgUggggCUGGCc -3'
miRNA:   3'- aAUGAGUaaaCUGCCGuaAa---GGCCGu -5'
21428 5' -48.8 NC_004812.1 + 67422 0.68 0.989576
Target:  5'- -gGCUCcca-GACGGCGggggugCCGGCGa -3'
miRNA:   3'- aaUGAGuaaaCUGCCGUaaa---GGCCGU- -5'
21428 5' -48.8 NC_004812.1 + 137338 0.68 0.988086
Target:  5'- -cGCgCAggUGACGGCGcucgcCCGGCAg -3'
miRNA:   3'- aaUGaGUaaACUGCCGUaaa--GGCCGU- -5'
21428 5' -48.8 NC_004812.1 + 38250 0.69 0.986437
Target:  5'- -aGCUCGaagggcagGugGGCGUUgUCCGGCc -3'
miRNA:   3'- aaUGAGUaaa-----CugCCGUAA-AGGCCGu -5'
21428 5' -48.8 NC_004812.1 + 4356 0.69 0.982617
Target:  5'- -gGCUCAUggcGACGGCGgcggCGGCGu -3'
miRNA:   3'- aaUGAGUAaa-CUGCCGUaaagGCCGU- -5'
21428 5' -48.8 NC_004812.1 + 129864 0.69 0.982617
Target:  5'- -gGCUCAUggcGACGGCGgcggCGGCGu -3'
miRNA:   3'- aaUGAGUAaa-CUGCCGUaaagGCCGU- -5'
21428 5' -48.8 NC_004812.1 + 145809 0.7 0.975442
Target:  5'- -gGCUCGgugugGGCGGCGgggUCGGCGg -3'
miRNA:   3'- aaUGAGUaaa--CUGCCGUaaaGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.