miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21429 5' -57.8 NC_004812.1 + 23078 0.66 0.831039
Target:  5'- cGCGGgGgaggGGAGGGCGaGGGG-UGCg -3'
miRNA:   3'- aUGUCgCa---CCUCUUGCaCCCCgACGa -5'
21429 5' -57.8 NC_004812.1 + 148742 0.66 0.831039
Target:  5'- cGCGGgGgaggGGAGGGCGaGGGG-UGCg -3'
miRNA:   3'- aUGUCgCa---CCUCUUGCaCCCCgACGa -5'
21429 5' -57.8 NC_004812.1 + 19892 0.66 0.831039
Target:  5'- cGCGGCGgcGGGGGACGcGGcGGCccGCg -3'
miRNA:   3'- aUGUCGCa-CCUCUUGCaCC-CCGa-CGa -5'
21429 5' -57.8 NC_004812.1 + 148820 0.66 0.831039
Target:  5'- cGCGGgGgaggGGAGGGCGaGGGG-UGCg -3'
miRNA:   3'- aUGUCgCa---CCUCUUGCaCCCCgACGa -5'
21429 5' -57.8 NC_004812.1 + 101946 0.66 0.831039
Target:  5'- cGCGGCGcGGGcggcGGGCGUcaGGGGCcGCg -3'
miRNA:   3'- aUGUCGCaCCU----CUUGCA--CCCCGaCGa -5'
21429 5' -57.8 NC_004812.1 + 148794 0.66 0.831039
Target:  5'- cGCGGgGgaggGGAGGGCGaGGGG-UGCg -3'
miRNA:   3'- aUGUCgCa---CCUCUUGCaCCCCgACGa -5'
21429 5' -57.8 NC_004812.1 + 77229 0.66 0.831039
Target:  5'- cGCGGCcgacGcGGGggUGUGGGGC-GCUg -3'
miRNA:   3'- aUGUCGca--C-CUCuuGCACCCCGaCGA- -5'
21429 5' -57.8 NC_004812.1 + 22974 0.66 0.831039
Target:  5'- cGCGGgGgaggGGAGGGCGaGGGG-UGCg -3'
miRNA:   3'- aUGUCgCa---CCUCUUGCaCCCCgACGa -5'
21429 5' -57.8 NC_004812.1 + 23026 0.66 0.831039
Target:  5'- cGCGGgGgaggGGAGGGCGaGGGG-UGCg -3'
miRNA:   3'- aUGUCgCa---CCUCUUGCaCCCCgACGa -5'
21429 5' -57.8 NC_004812.1 + 148768 0.66 0.831039
Target:  5'- cGCGGgGgaggGGAGGGCGaGGGG-UGCg -3'
miRNA:   3'- aUGUCgCa---CCUCUUGCaCCCCgACGa -5'
21429 5' -57.8 NC_004812.1 + 148716 0.66 0.831039
Target:  5'- cGCGGgGgaggGGAGGGCGaGGGG-UGCg -3'
miRNA:   3'- aUGUCgCa---CCUCUUGCaCCCCgACGa -5'
21429 5' -57.8 NC_004812.1 + 148587 0.66 0.831039
Target:  5'- cGCGGgGgaggGGAGGGCGaGGGG-UGCg -3'
miRNA:   3'- aUGUCgCa---CCUCUUGCaCCCCgACGa -5'
21429 5' -57.8 NC_004812.1 + 23052 0.66 0.831039
Target:  5'- cGCGGgGgaggGGAGGGCGaGGGG-UGCg -3'
miRNA:   3'- aUGUCgCa---CCUCUUGCaCCCCgACGa -5'
21429 5' -57.8 NC_004812.1 + 148483 0.66 0.831039
Target:  5'- cGCGGgGgaggGGAGGGCGaGGGG-UGCg -3'
miRNA:   3'- aUGUCgCa---CCUCUUGCaCCCCgACGa -5'
21429 5' -57.8 NC_004812.1 + 23104 0.66 0.831039
Target:  5'- cGCGGgGgaggGGAGGGCGaGGGG-UGCg -3'
miRNA:   3'- aUGUCgCa---CCUCUUGCaCCCCgACGa -5'
21429 5' -57.8 NC_004812.1 + 148509 0.66 0.831039
Target:  5'- cGCGGgGgaggGGAGGGCGaGGGG-UGCg -3'
miRNA:   3'- aUGUCgCa---CCUCUUGCaCCCCgACGa -5'
21429 5' -57.8 NC_004812.1 + 148535 0.66 0.831039
Target:  5'- cGCGGgGgaggGGAGGGCGaGGGG-UGCg -3'
miRNA:   3'- aUGUCgCa---CCUCUUGCaCCCCgACGa -5'
21429 5' -57.8 NC_004812.1 + 148561 0.66 0.831039
Target:  5'- cGCGGgGgaggGGAGGGCGaGGGG-UGCg -3'
miRNA:   3'- aUGUCgCa---CCUCUUGCaCCCCgACGa -5'
21429 5' -57.8 NC_004812.1 + 148639 0.66 0.831039
Target:  5'- cGCGGgGgaggGGAGGGCGaGGGG-UGCg -3'
miRNA:   3'- aUGUCgCa---CCUCUUGCaCCCCgACGa -5'
21429 5' -57.8 NC_004812.1 + 148613 0.66 0.831039
Target:  5'- cGCGGgGgaggGGAGGGCGaGGGG-UGCg -3'
miRNA:   3'- aUGUCgCa---CCUCUUGCaCCCCgACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.