miRNA display CGI


Results 1 - 20 of 438 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21430 3' -59.8 NC_004812.1 + 70037 0.66 0.821368
Target:  5'- cGGGugGGgugacaaaggCGacGACcGCCGCGUCGg -3'
miRNA:   3'- cCCCugCCa---------GCacCUGuUGGCGCGGC- -5'
21430 3' -59.8 NC_004812.1 + 5702 0.66 0.821368
Target:  5'- --cGGCGGUCuccGGCGAgCGCGCCGa -3'
miRNA:   3'- cccCUGCCAGcacCUGUUgGCGCGGC- -5'
21430 3' -59.8 NC_004812.1 + 32085 0.66 0.821368
Target:  5'- uGGGGCccggccccggaGGUCGccUGGugGGCCaugGCGCCc -3'
miRNA:   3'- cCCCUG-----------CCAGC--ACCugUUGG---CGCGGc -5'
21430 3' -59.8 NC_004812.1 + 54614 0.66 0.821368
Target:  5'- cGGGGACGGgCG-GGGCcggagaGGCC-CGCgGg -3'
miRNA:   3'- -CCCCUGCCaGCaCCUG------UUGGcGCGgC- -5'
21430 3' -59.8 NC_004812.1 + 131210 0.66 0.821368
Target:  5'- --cGGCGGUCuccGGCGAgCGCGCCGa -3'
miRNA:   3'- cccCUGCCAGcacCUGUUgGCGCGGC- -5'
21430 3' -59.8 NC_004812.1 + 146921 0.66 0.821368
Target:  5'- aGGGGugGaGUCGaacGuGACGcguuCCGgGCCGu -3'
miRNA:   3'- -CCCCugC-CAGCa--C-CUGUu---GGCgCGGC- -5'
21430 3' -59.8 NC_004812.1 + 80525 0.66 0.821368
Target:  5'- uGGcGGagaagcucGCGGacCG-GGACGcCCGCGCCGg -3'
miRNA:   3'- -CC-CC--------UGCCa-GCaCCUGUuGGCGCGGC- -5'
21430 3' -59.8 NC_004812.1 + 54032 0.66 0.821368
Target:  5'- aGGGGuuguacuucaGGUCgGUGGugugcCAGCCGCgGCUGg -3'
miRNA:   3'- -CCCCug--------CCAG-CACCu----GUUGGCG-CGGC- -5'
21430 3' -59.8 NC_004812.1 + 121493 0.66 0.821368
Target:  5'- uGGGGA-GGUagcgCGUGGG--GCCggGCGCCGc -3'
miRNA:   3'- -CCCCUgCCA----GCACCUguUGG--CGCGGC- -5'
21430 3' -59.8 NC_004812.1 + 152394 0.66 0.821368
Target:  5'- uGGGGA-GGUagcgCGUGGG--GCCggGCGCCGc -3'
miRNA:   3'- -CCCCUgCCA----GCACCUguUGG--CGCGGC- -5'
21430 3' -59.8 NC_004812.1 + 32407 0.66 0.821368
Target:  5'- cGGccuCGGUCGccgccgcgGGcGCGGCCGCGCCc -3'
miRNA:   3'- cCCcu-GCCAGCa-------CC-UGUUGGCGCGGc -5'
21430 3' -59.8 NC_004812.1 + 59662 0.66 0.820549
Target:  5'- -cGGACGGgccggCGcGGGCGccgcguuGCCGCGCgCGc -3'
miRNA:   3'- ccCCUGCCa----GCaCCUGU-------UGGCGCG-GC- -5'
21430 3' -59.8 NC_004812.1 + 95545 0.66 0.816435
Target:  5'- cGGGGCgucgcgccccggcggGGUCGagcgGGcuaaccgcACGGCCGCGCCc -3'
miRNA:   3'- cCCCUG---------------CCAGCa---CC--------UGUUGGCGCGGc -5'
21430 3' -59.8 NC_004812.1 + 89047 0.66 0.816435
Target:  5'- aGGGcCGG-CGUGGcgGCGGCgagagcugcugcacgCGCGCCGu -3'
miRNA:   3'- cCCCuGCCaGCACC--UGUUG---------------GCGCGGC- -5'
21430 3' -59.8 NC_004812.1 + 65379 0.66 0.816435
Target:  5'- cGGuGGcGCGGaUCGacgcgcuccgcgagcUGGAC-GCCGCGCCc -3'
miRNA:   3'- -CC-CC-UGCC-AGC---------------ACCUGuUGGCGCGGc -5'
21430 3' -59.8 NC_004812.1 + 126491 0.66 0.813116
Target:  5'- cGGGGGCuG-CG-GGACGugCGCcCCGc -3'
miRNA:   3'- -CCCCUGcCaGCaCCUGUugGCGcGGC- -5'
21430 3' -59.8 NC_004812.1 + 91202 0.66 0.813116
Target:  5'- cGGGGGCGGggggcgcggCGUccagcucgcGGAgcgcguCGAuCCGCGCCa -3'
miRNA:   3'- -CCCCUGCCa--------GCA---------CCU------GUU-GGCGCGGc -5'
21430 3' -59.8 NC_004812.1 + 69991 0.66 0.813116
Target:  5'- --cGACcaccCGcUGGGCAACCGCGCCGc -3'
miRNA:   3'- cccCUGcca-GC-ACCUGUUGGCGCGGC- -5'
21430 3' -59.8 NC_004812.1 + 123148 0.66 0.813116
Target:  5'- cGGGGuC-GUCGUcGACGACgGCGgCGg -3'
miRNA:   3'- -CCCCuGcCAGCAcCUGUUGgCGCgGC- -5'
21430 3' -59.8 NC_004812.1 + 19901 0.66 0.813116
Target:  5'- gGGGGACGcGgCGgcccGCGccgccgccACCGCGCCGg -3'
miRNA:   3'- -CCCCUGC-CaGCacc-UGU--------UGGCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.