miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21430 5' -52.1 NC_004812.1 + 4346 0.66 0.987092
Target:  5'- -aCGugGUGCucgUGGggCGcGCGUGCa -3'
miRNA:   3'- aaGCugCGUGua-GCCaaGUaCGCACG- -5'
21430 5' -52.1 NC_004812.1 + 43960 0.66 0.987092
Target:  5'- -gCGuccCGCAgGUCGGU--GUGCGUGg -3'
miRNA:   3'- aaGCu--GCGUgUAGCCAagUACGCACg -5'
21430 5' -52.1 NC_004812.1 + 62347 0.66 0.987092
Target:  5'- -gCGGCGCGCGcccgCGGcgCGUGgGUcgGCg -3'
miRNA:   3'- aaGCUGCGUGUa---GCCaaGUACgCA--CG- -5'
21430 5' -52.1 NC_004812.1 + 81084 0.66 0.987092
Target:  5'- cUCGACGCGCugCGGgcg--GaCGUGCa -3'
miRNA:   3'- aAGCUGCGUGuaGCCaaguaC-GCACG- -5'
21430 5' -52.1 NC_004812.1 + 35247 0.66 0.987092
Target:  5'- -aCGugGUGCucgUGGggCGcGCGUGCa -3'
miRNA:   3'- aaGCugCGUGua-GCCaaGUaCGCACG- -5'
21430 5' -52.1 NC_004812.1 + 28141 0.66 0.985405
Target:  5'- cUCGGCGCugGgCGcg-CAggGCGUGCu -3'
miRNA:   3'- aAGCUGCGugUaGCcaaGUa-CGCACG- -5'
21430 5' -52.1 NC_004812.1 + 153650 0.66 0.985405
Target:  5'- cUCGGCGCugGgCGcg-CAggGCGUGCu -3'
miRNA:   3'- aAGCUGCGugUaGCcaaGUa-CGCACG- -5'
21430 5' -52.1 NC_004812.1 + 122298 0.66 0.985405
Target:  5'- -cCGGCGCGCGUgaCGGgggcgaacgCGUG-GUGCg -3'
miRNA:   3'- aaGCUGCGUGUA--GCCaa-------GUACgCACG- -5'
21430 5' -52.1 NC_004812.1 + 111635 0.66 0.983554
Target:  5'- -gCGGgGCGCGU-GGUgUCGaGCGUGCu -3'
miRNA:   3'- aaGCUgCGUGUAgCCA-AGUaCGCACG- -5'
21430 5' -52.1 NC_004812.1 + 90614 0.66 0.979328
Target:  5'- -gCGGCG-AUGUCGGgcgUCGUGaUGUGCu -3'
miRNA:   3'- aaGCUGCgUGUAGCCa--AGUAC-GCACG- -5'
21430 5' -52.1 NC_004812.1 + 83243 0.66 0.979328
Target:  5'- --gGGCGCugGUggCGGUUa--GCGUGCu -3'
miRNA:   3'- aagCUGCGugUA--GCCAAguaCGCACG- -5'
21430 5' -52.1 NC_004812.1 + 131508 0.66 0.976935
Target:  5'- -cCGgaACGCGCGUCGGcgCGcgGCG-GCg -3'
miRNA:   3'- aaGC--UGCGUGUAGCCaaGUa-CGCaCG- -5'
21430 5' -52.1 NC_004812.1 + 5999 0.66 0.976935
Target:  5'- -cCGgaACGCGCGUCGGcgCGcgGCG-GCg -3'
miRNA:   3'- aaGC--UGCGUGUAGCCaaGUa-CGCaCG- -5'
21430 5' -52.1 NC_004812.1 + 10543 0.67 0.974344
Target:  5'- cUCGGCGUgaaucACG-CGcGUUC-UGCGUGCc -3'
miRNA:   3'- aAGCUGCG-----UGUaGC-CAAGuACGCACG- -5'
21430 5' -52.1 NC_004812.1 + 48005 0.67 0.974344
Target:  5'- cUUCGACGCGC--UGGacgUGUGgGUGCa -3'
miRNA:   3'- -AAGCUGCGUGuaGCCaa-GUACgCACG- -5'
21430 5' -52.1 NC_004812.1 + 107098 0.67 0.971548
Target:  5'- -cCGACGgGgGUCGuGUUgGUGCGggUGCg -3'
miRNA:   3'- aaGCUGCgUgUAGC-CAAgUACGC--ACG- -5'
21430 5' -52.1 NC_004812.1 + 147179 0.67 0.971257
Target:  5'- --aGGCGCACGUCaugagcaGG-UCGUGCauGUGCu -3'
miRNA:   3'- aagCUGCGUGUAG-------CCaAGUACG--CACG- -5'
21430 5' -52.1 NC_004812.1 + 29156 0.67 0.969769
Target:  5'- -cCGGCGCGCgcgcggcaauaaacaGUCGGUgcucUCGagaaggugGCGUGCg -3'
miRNA:   3'- aaGCUGCGUG---------------UAGCCA----AGUa-------CGCACG- -5'
21430 5' -52.1 NC_004812.1 + 55324 0.67 0.96854
Target:  5'- -cCGACGCccggGCGUCGGagC-UGCGgcgGCa -3'
miRNA:   3'- aaGCUGCG----UGUAGCCaaGuACGCa--CG- -5'
21430 5' -52.1 NC_004812.1 + 114519 0.67 0.96854
Target:  5'- -cCGGgGCGCGUCGGgUCG-GCGgacGCg -3'
miRNA:   3'- aaGCUgCGUGUAGCCaAGUaCGCa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.