miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21430 5' -52.1 NC_004812.1 + 153650 0.66 0.985405
Target:  5'- cUCGGCGCugGgCGcg-CAggGCGUGCu -3'
miRNA:   3'- aAGCUGCGugUaGCcaaGUa-CGCACG- -5'
21430 5' -52.1 NC_004812.1 + 46700 0.67 0.961858
Target:  5'- -gCGACgGCGCucUCGGUgacggCAUacgGCGUGCu -3'
miRNA:   3'- aaGCUG-CGUGu-AGCCAa----GUA---CGCACG- -5'
21430 5' -52.1 NC_004812.1 + 15543 0.67 0.965312
Target:  5'- -cCGGCGCGCAgcgCGGagaGUGCGUcGUc -3'
miRNA:   3'- aaGCUGCGUGUa--GCCaagUACGCA-CG- -5'
21430 5' -52.1 NC_004812.1 + 94275 0.67 0.96854
Target:  5'- --gGGCGCGCGccgCGGccCggGCGUGCg -3'
miRNA:   3'- aagCUGCGUGUa--GCCaaGuaCGCACG- -5'
21430 5' -52.1 NC_004812.1 + 147179 0.67 0.971257
Target:  5'- --aGGCGCACGUCaugagcaGG-UCGUGCauGUGCu -3'
miRNA:   3'- aagCUGCGUGUAG-------CCaAGUACG--CACG- -5'
21430 5' -52.1 NC_004812.1 + 48005 0.67 0.974344
Target:  5'- cUUCGACGCGC--UGGacgUGUGgGUGCa -3'
miRNA:   3'- -AAGCUGCGUGuaGCCaa-GUACgCACG- -5'
21430 5' -52.1 NC_004812.1 + 131508 0.66 0.976935
Target:  5'- -cCGgaACGCGCGUCGGcgCGcgGCG-GCg -3'
miRNA:   3'- aaGC--UGCGUGUAGCCaaGUa-CGCaCG- -5'
21430 5' -52.1 NC_004812.1 + 90614 0.66 0.979328
Target:  5'- -gCGGCG-AUGUCGGgcgUCGUGaUGUGCu -3'
miRNA:   3'- aaGCUGCgUGUAGCCa--AGUAC-GCACG- -5'
21430 5' -52.1 NC_004812.1 + 111635 0.66 0.983554
Target:  5'- -gCGGgGCGCGU-GGUgUCGaGCGUGCu -3'
miRNA:   3'- aaGCUgCGUGUAgCCA-AGUaCGCACG- -5'
21430 5' -52.1 NC_004812.1 + 114417 0.68 0.95425
Target:  5'- cUCGAcacCGCGCGgguggaCGGcgCGUGCGUGg -3'
miRNA:   3'- aAGCU---GCGUGUa-----GCCaaGUACGCACg -5'
21430 5' -52.1 NC_004812.1 + 15463 0.68 0.947026
Target:  5'- cUCGGCGCGCAUCGccgacuacgaccGCGUGUg -3'
miRNA:   3'- aAGCUGCGUGUAGCcaagua------CGCACG- -5'
21430 5' -52.1 NC_004812.1 + 150620 0.68 0.945677
Target:  5'- -cCGACGCGCGUucCGGggCGUGgGccGCa -3'
miRNA:   3'- aaGCUGCGUGUA--GCCaaGUACgCa-CG- -5'
21430 5' -52.1 NC_004812.1 + 122847 0.71 0.857797
Target:  5'- -cCGGCGCGCAcggcguccUCGGcgUCGcgccGCGUGCg -3'
miRNA:   3'- aaGCUGCGUGU--------AGCCa-AGUa---CGCACG- -5'
21430 5' -52.1 NC_004812.1 + 128584 0.7 0.894691
Target:  5'- -cCGccGCGCGCGUCGGUcCAgGCGgGCg -3'
miRNA:   3'- aaGC--UGCGUGUAGCCAaGUaCGCaCG- -5'
21430 5' -52.1 NC_004812.1 + 135437 0.69 0.913951
Target:  5'- -aCGACGCGCGccUCGGcgUCccGCG-GCa -3'
miRNA:   3'- aaGCUGCGUGU--AGCCa-AGuaCGCaCG- -5'
21430 5' -52.1 NC_004812.1 + 80985 0.69 0.919871
Target:  5'- -gCGGCGCGCugGUCGG-UCGUGCucGCg -3'
miRNA:   3'- aaGCUGCGUG--UAGCCaAGUACGcaCG- -5'
21430 5' -52.1 NC_004812.1 + 39055 0.69 0.930952
Target:  5'- gUCGACGgGCcgcccgCGGgugUCG-GCGUGCg -3'
miRNA:   3'- aAGCUGCgUGua----GCCa--AGUaCGCACG- -5'
21430 5' -52.1 NC_004812.1 + 60852 0.68 0.94102
Target:  5'- --aGAgGCGCGUCaGGUUCGggGCGcGCg -3'
miRNA:   3'- aagCUgCGUGUAG-CCAAGUa-CGCaCG- -5'
21430 5' -52.1 NC_004812.1 + 144145 0.68 0.94102
Target:  5'- -gUGGCGUggGCgAUCGGUgCGUGUGUGUg -3'
miRNA:   3'- aaGCUGCG--UG-UAGCCAaGUACGCACG- -5'
21430 5' -52.1 NC_004812.1 + 64757 0.68 0.944306
Target:  5'- cUCGAUGCGCAUCaucuacggcgacacGGacuccgucUUCGUGCuGUGCc -3'
miRNA:   3'- aAGCUGCGUGUAG--------------CC--------AAGUACG-CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.