miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21431 3' -57.6 NC_004812.1 + 72005 0.67 0.856803
Target:  5'- gGCGcGGUCGucuCGCGgUCgCUCGggggcCGGGa -3'
miRNA:   3'- -UGUaCCAGCu--GCGCgAG-GAGCa----GCCC- -5'
21431 3' -57.6 NC_004812.1 + 16516 0.67 0.856803
Target:  5'- cGCggGGgCGAUGCGCUCacgCGU-GGGa -3'
miRNA:   3'- -UGuaCCaGCUGCGCGAGga-GCAgCCC- -5'
21431 3' -57.6 NC_004812.1 + 20998 0.67 0.849182
Target:  5'- gACGUcGUCGcCGcCGCgCCUCGgccgCGGGg -3'
miRNA:   3'- -UGUAcCAGCuGC-GCGaGGAGCa---GCCC- -5'
21431 3' -57.6 NC_004812.1 + 145746 0.67 0.849182
Target:  5'- cGCG-GGUCGGgGgGCUCgUCGgucgucgcgCGGGg -3'
miRNA:   3'- -UGUaCCAGCUgCgCGAGgAGCa--------GCCC- -5'
21431 3' -57.6 NC_004812.1 + 77238 0.67 0.849182
Target:  5'- cGCggGGgugUGGgGCGCUgcCCUCG-CGGGg -3'
miRNA:   3'- -UGuaCCa--GCUgCGCGA--GGAGCaGCCC- -5'
21431 3' -57.6 NC_004812.1 + 6906 0.67 0.849182
Target:  5'- -gGUGGUCucggGGCGCGCUgCgccCG-CGGGg -3'
miRNA:   3'- ugUACCAG----CUGCGCGAgGa--GCaGCCC- -5'
21431 3' -57.6 NC_004812.1 + 101226 0.67 0.849182
Target:  5'- aGCAgGGgCGcCGCGCcggCCUCGaCGGGc -3'
miRNA:   3'- -UGUaCCaGCuGCGCGa--GGAGCaGCCC- -5'
21431 3' -57.6 NC_004812.1 + 37807 0.67 0.849182
Target:  5'- -gGUGGUCucggGGCGCGCUgCgccCG-CGGGg -3'
miRNA:   3'- ugUACCAG----CUGCGCGAgGa--GCaGCCC- -5'
21431 3' -57.6 NC_004812.1 + 22754 0.67 0.841374
Target:  5'- gGCGUGGUgGACcugGUGCgUCCagGUgGGGg -3'
miRNA:   3'- -UGUACCAgCUG---CGCG-AGGagCAgCCC- -5'
21431 3' -57.6 NC_004812.1 + 151388 0.67 0.841374
Target:  5'- cGCGaGGcCGACGCcgGCUcggCCUCGgagUCGGGg -3'
miRNA:   3'- -UGUaCCaGCUGCG--CGA---GGAGC---AGCCC- -5'
21431 3' -57.6 NC_004812.1 + 100137 0.67 0.841374
Target:  5'- gGCGUGG-CGGCGCGggCggCGgggCGGGg -3'
miRNA:   3'- -UGUACCaGCUGCGCgaGgaGCa--GCCC- -5'
21431 3' -57.6 NC_004812.1 + 69252 0.67 0.841374
Target:  5'- uCAgGGcCGAcugcagccCGCGCUCCaugagccgcaUCGUCGGGc -3'
miRNA:   3'- uGUaCCaGCU--------GCGCGAGG----------AGCAGCCC- -5'
21431 3' -57.6 NC_004812.1 + 25880 0.67 0.841374
Target:  5'- cGCGaGGcCGACGCcgGCUcggCCUCGgagUCGGGg -3'
miRNA:   3'- -UGUaCCaGCUGCG--CGA---GGAGC---AGCCC- -5'
21431 3' -57.6 NC_004812.1 + 48021 0.67 0.833387
Target:  5'- aGCGUGGUUaGGcCGCGCUgCC-CGagCGGGg -3'
miRNA:   3'- -UGUACCAG-CU-GCGCGA-GGaGCa-GCCC- -5'
21431 3' -57.6 NC_004812.1 + 152110 0.67 0.833387
Target:  5'- gACGUGGagcUCGAcCGCGCcugCUUCGaggccUCGGGc -3'
miRNA:   3'- -UGUACC---AGCU-GCGCGa--GGAGC-----AGCCC- -5'
21431 3' -57.6 NC_004812.1 + 76817 0.67 0.833387
Target:  5'- cGCAgGG-CGGCGCGCaCCUC--CGGGg -3'
miRNA:   3'- -UGUaCCaGCUGCGCGaGGAGcaGCCC- -5'
21431 3' -57.6 NC_004812.1 + 65383 0.67 0.833387
Target:  5'- gGCGcGGaUCGACGCGCUCCgCGagCuGGa -3'
miRNA:   3'- -UGUaCC-AGCUGCGCGAGGaGCa-GcCC- -5'
21431 3' -57.6 NC_004812.1 + 41199 0.67 0.833387
Target:  5'- ---cGGUCGGCGCGC-Cg-CG-CGGGg -3'
miRNA:   3'- uguaCCAGCUGCGCGaGgaGCaGCCC- -5'
21431 3' -57.6 NC_004812.1 + 26602 0.67 0.833387
Target:  5'- gACGUGGagcUCGAcCGCGCcugCUUCGaggccUCGGGc -3'
miRNA:   3'- -UGUACC---AGCU-GCGCGa--GGAGC-----AGCCC- -5'
21431 3' -57.6 NC_004812.1 + 129123 0.67 0.833387
Target:  5'- uCGUGGgCGACuGCGCccUCCgCGcCGGGg -3'
miRNA:   3'- uGUACCaGCUG-CGCG--AGGaGCaGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.