miRNA display CGI


Results 21 - 40 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21431 5' -56.6 NC_004812.1 + 62237 0.66 0.902457
Target:  5'- aCGCCgcCGCCAGGGcaaACCAGcgCGccGGGg -3'
miRNA:   3'- -GUGGa-GCGGUCUCc--UGGUCuaGC--UCC- -5'
21431 5' -56.6 NC_004812.1 + 49138 0.66 0.902457
Target:  5'- gGCCaUCGCCgAGcGGGCCcuggGGAUCGGcGGc -3'
miRNA:   3'- gUGG-AGCGG-UCuCCUGG----UCUAGCU-CC- -5'
21431 5' -56.6 NC_004812.1 + 37700 0.66 0.902457
Target:  5'- uGCCUcggggggcgCGCCGGgcgucuGGGGCUGGGUgGGGGg -3'
miRNA:   3'- gUGGA---------GCGGUC------UCCUGGUCUAgCUCC- -5'
21431 5' -56.6 NC_004812.1 + 22317 0.66 0.902457
Target:  5'- gGCCUcggCGCCGGGgcuGGACCugguuccccuAGAcUCGGGGa -3'
miRNA:   3'- gUGGA---GCGGUCU---CCUGG----------UCU-AGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 37269 0.66 0.902457
Target:  5'- cCGCC-CGCCAG-GGACgCGGGcagcguucCGGGGg -3'
miRNA:   3'- -GUGGaGCGGUCuCCUG-GUCUa-------GCUCC- -5'
21431 5' -56.6 NC_004812.1 + 87749 0.66 0.902457
Target:  5'- aCGCC-CGCCGGGGGaacGCCAGcAUCa--- -3'
miRNA:   3'- -GUGGaGCGGUCUCC---UGGUC-UAGcucc -5'
21431 5' -56.6 NC_004812.1 + 3245 0.66 0.901833
Target:  5'- gCGCC-CGCCAGGGGcgcccgcgcccccGCCGcc-CGAGGa -3'
miRNA:   3'- -GUGGaGCGGUCUCC-------------UGGUcuaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 34146 0.66 0.901833
Target:  5'- gCGCC-CGCCAGGGGcgcccgcgcccccGCCGcc-CGAGGa -3'
miRNA:   3'- -GUGGaGCGGUCUCC-------------UGGUcuaGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 122087 0.66 0.896119
Target:  5'- gGCCUgagCGCCGGGgcGGGCCuGGGUC-AGGg -3'
miRNA:   3'- gUGGA---GCGGUCU--CCUGG-UCUAGcUCC- -5'
21431 5' -56.6 NC_004812.1 + 57034 0.66 0.896119
Target:  5'- gACCUgGCCgaAGAGGGCCAGGagcuUCugccGGGc -3'
miRNA:   3'- gUGGAgCGG--UCUCCUGGUCU----AGc---UCC- -5'
21431 5' -56.6 NC_004812.1 + 77450 0.66 0.896119
Target:  5'- gCAgCUCgGCCGGGGGGCUcguggcgagcGGAggCGGGGc -3'
miRNA:   3'- -GUgGAG-CGGUCUCCUGG----------UCUa-GCUCC- -5'
21431 5' -56.6 NC_004812.1 + 86072 0.66 0.896119
Target:  5'- gCACCggucgcagcgCGCUGGcGGuCCuGAUCGAGGc -3'
miRNA:   3'- -GUGGa---------GCGGUCuCCuGGuCUAGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 97497 0.66 0.896119
Target:  5'- aGCCagUGCCAcGGGGucuuugccaGCCAGucgGUCGAGGg -3'
miRNA:   3'- gUGGa-GCGGU-CUCC---------UGGUC---UAGCUCC- -5'
21431 5' -56.6 NC_004812.1 + 31520 0.66 0.896119
Target:  5'- cCGCCgCGCgAGGGGaggacaGCCGGgAUCGAGu -3'
miRNA:   3'- -GUGGaGCGgUCUCC------UGGUC-UAGCUCc -5'
21431 5' -56.6 NC_004812.1 + 152988 0.66 0.896119
Target:  5'- gGCCUgagCGCCGGGgcGGGCCuGGGUC-AGGg -3'
miRNA:   3'- gUGGA---GCGGUCU--CCUGG-UCUAGcUCC- -5'
21431 5' -56.6 NC_004812.1 + 619 0.66 0.896119
Target:  5'- cCGCCgCGCgAGGGGaggacaGCCGGgAUCGAGu -3'
miRNA:   3'- -GUGGaGCGgUCUCC------UGGUC-UAGCUCc -5'
21431 5' -56.6 NC_004812.1 + 107766 0.66 0.889557
Target:  5'- gCGCCUCGUCucgucGAGGAcuCCAGGgcgucgUCGAGc -3'
miRNA:   3'- -GUGGAGCGGu----CUCCU--GGUCU------AGCUCc -5'
21431 5' -56.6 NC_004812.1 + 113235 0.66 0.889557
Target:  5'- gCAgCUgGCCGGuGGGCCGcucgCGGGGg -3'
miRNA:   3'- -GUgGAgCGGUCuCCUGGUcua-GCUCC- -5'
21431 5' -56.6 NC_004812.1 + 79687 0.66 0.889557
Target:  5'- cCACCUCGCCucGGGGugCuccuGGGUguaguacgUGAGGu -3'
miRNA:   3'- -GUGGAGCGGu-CUCCugG----UCUA--------GCUCC- -5'
21431 5' -56.6 NC_004812.1 + 16219 0.66 0.882775
Target:  5'- gGCCgcgCGCCGGAGGcggagccggccgGCCAGGaCGAc- -3'
miRNA:   3'- gUGGa--GCGGUCUCC------------UGGUCUaGCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.