miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21432 3' -55.4 NC_004812.1 + 143135 0.66 0.930406
Target:  5'- -cGGACGUGUUCGUCcccGCGACgC-CACc -3'
miRNA:   3'- uaCCUGCGCAAGCGGc--UGUUG-GaGUG- -5'
21432 3' -55.4 NC_004812.1 + 138959 0.66 0.930406
Target:  5'- -aGGGCGagc-CGCCGGCGACCgaaGCc -3'
miRNA:   3'- uaCCUGCgcaaGCGGCUGUUGGag-UG- -5'
21432 3' -55.4 NC_004812.1 + 100699 0.66 0.930406
Target:  5'- -cGGGCGUG-UCGCagcGCGACCgUCGCc -3'
miRNA:   3'- uaCCUGCGCaAGCGgc-UGUUGG-AGUG- -5'
21432 3' -55.4 NC_004812.1 + 38875 0.66 0.930406
Target:  5'- gGUGGcGCGCGacgUCGUCGAggcuccgcaCGGCCUUGCc -3'
miRNA:   3'- -UACC-UGCGCa--AGCGGCU---------GUUGGAGUG- -5'
21432 3' -55.4 NC_004812.1 + 107636 0.66 0.930406
Target:  5'- -cGGcCGCGUcgcggggcacgUCGCCGgggGCGGCCggcagCACg -3'
miRNA:   3'- uaCCuGCGCA-----------AGCGGC---UGUUGGa----GUG- -5'
21432 3' -55.4 NC_004812.1 + 139109 0.66 0.930406
Target:  5'- -aGGGCGCG-UCGgCGACGuCCgggagCGCc -3'
miRNA:   3'- uaCCUGCGCaAGCgGCUGUuGGa----GUG- -5'
21432 3' -55.4 NC_004812.1 + 46931 0.66 0.930406
Target:  5'- -cGGACacaucCGc-CGCCGACAGCCgCGCg -3'
miRNA:   3'- uaCCUGc----GCaaGCGGCUGUUGGaGUG- -5'
21432 3' -55.4 NC_004812.1 + 72853 0.66 0.930406
Target:  5'- uGUGGGCGCGcuggCGUcccuggCGGCAGCCgggccCGCg -3'
miRNA:   3'- -UACCUGCGCaa--GCG------GCUGUUGGa----GUG- -5'
21432 3' -55.4 NC_004812.1 + 109621 0.66 0.930406
Target:  5'- -gGGGCagGCGUUCGCagcccuggcgcgCGACGACUgggaUCGCa -3'
miRNA:   3'- uaCCUG--CGCAAGCG------------GCUGUUGG----AGUG- -5'
21432 3' -55.4 NC_004812.1 + 98330 0.66 0.930406
Target:  5'- cUGGcuCGCGUaCGCCGAcCGGCCgUCGu -3'
miRNA:   3'- uACCu-GCGCAaGCGGCU-GUUGG-AGUg -5'
21432 3' -55.4 NC_004812.1 + 19401 0.66 0.930406
Target:  5'- -aGGACGCGcgCGgUcACGGCCUgCGCg -3'
miRNA:   3'- uaCCUGCGCaaGCgGcUGUUGGA-GUG- -5'
21432 3' -55.4 NC_004812.1 + 51637 0.66 0.930406
Target:  5'- -cGGcCGCGUgcgCGCCGAgAGCCc--- -3'
miRNA:   3'- uaCCuGCGCAa--GCGGCUgUUGGagug -5'
21432 3' -55.4 NC_004812.1 + 65971 0.66 0.925086
Target:  5'- cUGG-CGCGcUCGCuCGuCAACCagCACa -3'
miRNA:   3'- uACCuGCGCaAGCG-GCuGUUGGa-GUG- -5'
21432 3' -55.4 NC_004812.1 + 131290 0.66 0.925086
Target:  5'- gGUGGcgACGCGcUCGCCgGugAGCUUC-Cg -3'
miRNA:   3'- -UACC--UGCGCaAGCGG-CugUUGGAGuG- -5'
21432 3' -55.4 NC_004812.1 + 95749 0.66 0.925086
Target:  5'- cUGG-CGCG-UCG-CGGCGGCCgcgCACa -3'
miRNA:   3'- uACCuGCGCaAGCgGCUGUUGGa--GUG- -5'
21432 3' -55.4 NC_004812.1 + 5508 0.66 0.925086
Target:  5'- -aGGACGcCGggCGCCGcGCAGCagggaCACg -3'
miRNA:   3'- uaCCUGC-GCaaGCGGC-UGUUGga---GUG- -5'
21432 3' -55.4 NC_004812.1 + 73798 0.66 0.925086
Target:  5'- -cGGG-GCGggCGCCGGCGcCC-CGCg -3'
miRNA:   3'- uaCCUgCGCaaGCGGCUGUuGGaGUG- -5'
21432 3' -55.4 NC_004812.1 + 153539 0.66 0.925086
Target:  5'- cUGGAC-CGacgCGCgCGGCGGCCUCu- -3'
miRNA:   3'- uACCUGcGCaa-GCG-GCUGUUGGAGug -5'
21432 3' -55.4 NC_004812.1 + 52085 0.66 0.925086
Target:  5'- uUGGcguuCGCGggCGCgCGACGACCgcccguccCGCg -3'
miRNA:   3'- uACCu---GCGCaaGCG-GCUGUUGGa-------GUG- -5'
21432 3' -55.4 NC_004812.1 + 138247 0.66 0.925086
Target:  5'- -cGGGCccGCGUaCGCCGcgGCGGCCgcggUCGCg -3'
miRNA:   3'- uaCCUG--CGCAaGCGGC--UGUUGG----AGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.