miRNA display CGI


Results 1 - 20 of 854 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21432 5' -61.7 NC_004812.1 + 114681 0.65 0.72165
Target:  5'- cCGGUGcCGGGCgcgcCCGGggcCGCGGGggaguacgugaugcACGGCg -3'
miRNA:   3'- -GCCGC-GCUCGa---GGCC---GUGCUC--------------UGCCG- -5'
21432 5' -61.7 NC_004812.1 + 45588 0.66 0.718821
Target:  5'- uGG-GCGAcccaguagugcucccGCUCCagcgcccucaugGGCGCGGGgACGGCc -3'
miRNA:   3'- gCCgCGCU---------------CGAGG------------CCGUGCUC-UGCCG- -5'
21432 5' -61.7 NC_004812.1 + 79152 0.66 0.718821
Target:  5'- uGGCGCGcuugggguGGUgucggCCGGCggacaggucuucgagGCuGGACGGCg -3'
miRNA:   3'- gCCGCGC--------UCGa----GGCCG---------------UGcUCUGCCG- -5'
21432 5' -61.7 NC_004812.1 + 32237 0.66 0.715987
Target:  5'- gCGGUccGCGGGCgguccgccggaaggCCGGCuaugcaaacgccguGCGcGACGGCc -3'
miRNA:   3'- -GCCG--CGCUCGa-------------GGCCG--------------UGCuCUGCCG- -5'
21432 5' -61.7 NC_004812.1 + 1336 0.66 0.715987
Target:  5'- gCGGUccGCGGGCgguccgccggaaggCCGGCuaugcaaacgccguGCGcGACGGCc -3'
miRNA:   3'- -GCCG--CGCUCGa-------------GGCCG--------------UGCuCUGCCG- -5'
21432 5' -61.7 NC_004812.1 + 96266 0.66 0.715041
Target:  5'- aGGCGCGGGCgggcCUGGCGCccc-CGcGCa -3'
miRNA:   3'- gCCGCGCUCGa---GGCCGUGcucuGC-CG- -5'
21432 5' -61.7 NC_004812.1 + 76118 0.66 0.715041
Target:  5'- nCGGCGgccuCGAGCUCguCGGCGCGccGCcGCg -3'
miRNA:   3'- -GCCGC----GCUCGAG--GCCGUGCucUGcCG- -5'
21432 5' -61.7 NC_004812.1 + 105302 0.66 0.715041
Target:  5'- gGGCGUaGGGCUgCCcGUACGGGGCcGCc -3'
miRNA:   3'- gCCGCG-CUCGA-GGcCGUGCUCUGcCG- -5'
21432 5' -61.7 NC_004812.1 + 129357 0.66 0.715041
Target:  5'- aGGCGCauGAGCaCCaGCGCGucgcgcguGCGGCg -3'
miRNA:   3'- gCCGCG--CUCGaGGcCGUGCuc------UGCCG- -5'
21432 5' -61.7 NC_004812.1 + 93922 0.66 0.715041
Target:  5'- uGGCGCGuGCcguacaCGuGCACGGcGACGcGCc -3'
miRNA:   3'- gCCGCGCuCGag----GC-CGUGCU-CUGC-CG- -5'
21432 5' -61.7 NC_004812.1 + 154386 0.66 0.715041
Target:  5'- -cGCGCGuGCgCUGGgcCGCGGGccGCGGCg -3'
miRNA:   3'- gcCGCGCuCGaGGCC--GUGCUC--UGCCG- -5'
21432 5' -61.7 NC_004812.1 + 107818 0.66 0.715041
Target:  5'- uGGCGCGcgucaGGUUCgcgaGGUAgCGGGGCaGGCg -3'
miRNA:   3'- gCCGCGC-----UCGAGg---CCGU-GCUCUG-CCG- -5'
21432 5' -61.7 NC_004812.1 + 144499 0.66 0.715041
Target:  5'- gGGaCGCu-GgUCCuGCGCGAGGCGcGCg -3'
miRNA:   3'- gCC-GCGcuCgAGGcCGUGCUCUGC-CG- -5'
21432 5' -61.7 NC_004812.1 + 3849 0.66 0.715041
Target:  5'- aGGCGCauGAGCaCCaGCGCGucgcgcguGCGGCg -3'
miRNA:   3'- gCCGCG--CUCGaGGcCGUGCuc------UGCCG- -5'
21432 5' -61.7 NC_004812.1 + 145117 0.66 0.715041
Target:  5'- -uGCGCGAcGCgUCGGagGCGAG-CGGCg -3'
miRNA:   3'- gcCGCGCU-CGaGGCCg-UGCUCuGCCG- -5'
21432 5' -61.7 NC_004812.1 + 78453 0.66 0.715041
Target:  5'- uCGGUcaccucGCGGGCgaugCCGGCcucgugcgccGCGAGGC-GCg -3'
miRNA:   3'- -GCCG------CGCUCGa---GGCCG----------UGCUCUGcCG- -5'
21432 5' -61.7 NC_004812.1 + 57142 0.66 0.715041
Target:  5'- gGGCGCGGGCgcaGGCGCccgucucGCGGUc -3'
miRNA:   3'- gCCGCGCUCGaggCCGUGcuc----UGCCG- -5'
21432 5' -61.7 NC_004812.1 + 108628 0.66 0.715041
Target:  5'- aGGCGCGcguGCUggccgccuaCCGGCggGCGuacuACGGCa -3'
miRNA:   3'- gCCGCGCu--CGA---------GGCCG--UGCuc--UGCCG- -5'
21432 5' -61.7 NC_004812.1 + 100829 0.66 0.715041
Target:  5'- gGGgGCGGGCgCCGcGaCGCcgGGGAgGGCg -3'
miRNA:   3'- gCCgCGCUCGaGGC-C-GUG--CUCUgCCG- -5'
21432 5' -61.7 NC_004812.1 + 94630 0.66 0.715041
Target:  5'- gGGCGUuGGgaCCGGCgACGAG--GGCg -3'
miRNA:   3'- gCCGCGcUCgaGGCCG-UGCUCugCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.