miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21434 3' -57.4 NC_004812.1 + 87934 0.66 0.811978
Target:  5'- aGGGACG-CcAGGCGCUGGGUg---- -3'
miRNA:   3'- cUCCUGUaGcUCCGCGACCCGaagua -5'
21434 3' -57.4 NC_004812.1 + 101901 0.66 0.811978
Target:  5'- uAGGGCGcccCGAGGCGCggcggucGGGCcUCGg -3'
miRNA:   3'- cUCCUGUa--GCUCCGCGa------CCCGaAGUa -5'
21434 3' -57.4 NC_004812.1 + 30994 0.66 0.803102
Target:  5'- aGGGACGggcCGGGGCGCgcgcgGGGCc---- -3'
miRNA:   3'- cUCCUGUa--GCUCCGCGa----CCCGaagua -5'
21434 3' -57.4 NC_004812.1 + 59525 0.66 0.803102
Target:  5'- aGGGGGCGguagcCGAGGCGCUcGGGaccCAg -3'
miRNA:   3'- -CUCCUGUa----GCUCCGCGA-CCCgaaGUa -5'
21434 3' -57.4 NC_004812.1 + 156503 0.66 0.803102
Target:  5'- aGGGACGggcCGGGGCGCgcgcgGGGCc---- -3'
miRNA:   3'- cUCCUGUa--GCUCCGCGa----CCCGaagua -5'
21434 3' -57.4 NC_004812.1 + 93 0.66 0.803102
Target:  5'- aGGGACGggcCGGGGCGCgcgcgGGGCc---- -3'
miRNA:   3'- cUCCUGUa--GCUCCGCGa----CCCGaagua -5'
21434 3' -57.4 NC_004812.1 + 60852 0.66 0.803102
Target:  5'- aGAGGcGCGucagguUCGGGGCGCgcggcUGGGCUcCAg -3'
miRNA:   3'- -CUCC-UGU------AGCUCCGCG-----ACCCGAaGUa -5'
21434 3' -57.4 NC_004812.1 + 115433 0.66 0.803102
Target:  5'- cGAGcGACGUUGGGGCGgCgcgccgGGGCU-CGa -3'
miRNA:   3'- -CUC-CUGUAGCUCCGC-Ga-----CCCGAaGUa -5'
21434 3' -57.4 NC_004812.1 + 20739 0.67 0.784888
Target:  5'- cGAGGACGUCGGGGgCGCUGaaGUUg--- -3'
miRNA:   3'- -CUCCUGUAGCUCC-GCGACc-CGAagua -5'
21434 3' -57.4 NC_004812.1 + 71384 0.67 0.784888
Target:  5'- uGGGGACGggCGAGGCGg-GGGUcgCAg -3'
miRNA:   3'- -CUCCUGUa-GCUCCGCgaCCCGaaGUa -5'
21434 3' -57.4 NC_004812.1 + 133687 0.67 0.775568
Target:  5'- -uGGGCGUCcAGGCGCggGGGCg---- -3'
miRNA:   3'- cuCCUGUAGcUCCGCGa-CCCGaagua -5'
21434 3' -57.4 NC_004812.1 + 72053 0.67 0.775568
Target:  5'- cGGGGgGUCgGGGGCGCUggGGGCggCGg -3'
miRNA:   3'- cUCCUgUAG-CUCCGCGA--CCCGaaGUa -5'
21434 3' -57.4 NC_004812.1 + 16153 0.67 0.775568
Target:  5'- cGGGACAUCGAgcuccGGCGCgcccgacuggGGGCgcUCGa -3'
miRNA:   3'- cUCCUGUAGCU-----CCGCGa---------CCCGa-AGUa -5'
21434 3' -57.4 NC_004812.1 + 53552 0.67 0.766119
Target:  5'- cGAGGGCGcCGAGGUGCUccGGGag-CAc -3'
miRNA:   3'- -CUCCUGUaGCUCCGCGA--CCCgaaGUa -5'
21434 3' -57.4 NC_004812.1 + 109456 0.67 0.766119
Target:  5'- aGAGGGCGgcgCgGGGGCGCccgcGGGCUgcggCAUc -3'
miRNA:   3'- -CUCCUGUa--G-CUCCGCGa---CCCGAa---GUA- -5'
21434 3' -57.4 NC_004812.1 + 115268 0.67 0.756548
Target:  5'- cGGGAC-UCGAGGcCGUcgUGGGCgUCGa -3'
miRNA:   3'- cUCCUGuAGCUCC-GCG--ACCCGaAGUa -5'
21434 3' -57.4 NC_004812.1 + 126731 0.67 0.756548
Target:  5'- cGAGGugGUCGGGGgaaGCgGGGCg---- -3'
miRNA:   3'- -CUCCugUAGCUCCg--CGaCCCGaagua -5'
21434 3' -57.4 NC_004812.1 + 103653 0.67 0.756548
Target:  5'- gGAGGGCgggccccucGUCGAGGgccaGCUGGGCg---- -3'
miRNA:   3'- -CUCCUG---------UAGCUCCg---CGACCCGaagua -5'
21434 3' -57.4 NC_004812.1 + 122362 0.68 0.737084
Target:  5'- cGGGGGC--CGGGGCGCgGGGCgcggCGg -3'
miRNA:   3'- -CUCCUGuaGCUCCGCGaCCCGaa--GUa -5'
21434 3' -57.4 NC_004812.1 + 153263 0.68 0.737084
Target:  5'- cGGGGGC--CGGGGCGCgGGGCgcggCGg -3'
miRNA:   3'- -CUCCUGuaGCUCCGCGaCCCGaa--GUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.