miRNA display CGI


Results 21 - 40 of 233 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21434 5' -51.9 NC_004812.1 + 91523 0.66 0.990693
Target:  5'- cGgcCGgGGCCUgCGGACgcgagcccgCGUCcGCCg -3'
miRNA:   3'- -CauGCgCCGGA-GCUUGaa-------GCAGuUGG- -5'
21434 5' -51.9 NC_004812.1 + 24092 0.66 0.990693
Target:  5'- uGUGCGCcgacccGCCgcggCGAugUUCGUgCGACg -3'
miRNA:   3'- -CAUGCGc-----CGGa---GCUugAAGCA-GUUGg -5'
21434 5' -51.9 NC_004812.1 + 118537 0.66 0.990693
Target:  5'- -cGCGgGGCCUgGAGCUcagcguggGUCGGCa -3'
miRNA:   3'- caUGCgCCGGAgCUUGAag------CAGUUGg -5'
21434 5' -51.9 NC_004812.1 + 29360 0.66 0.990693
Target:  5'- -gGCGCGGgCUCGGGCcgCGgaggCGcgcgggGCCg -3'
miRNA:   3'- caUGCGCCgGAGCUUGaaGCa---GU------UGG- -5'
21434 5' -51.9 NC_004812.1 + 120175 0.66 0.990693
Target:  5'- -aACGCGGCCgCGGucuuccuacgcaACgccgUCGUCGcgggcaACCg -3'
miRNA:   3'- caUGCGCCGGaGCU------------UGa---AGCAGU------UGG- -5'
21434 5' -51.9 NC_004812.1 + 52339 0.66 0.98993
Target:  5'- aUACGCGGCC-CGccccGGCgggUCGUUAgaaaucugggggcgcGCCg -3'
miRNA:   3'- cAUGCGCCGGaGC----UUGa--AGCAGU---------------UGG- -5'
21434 5' -51.9 NC_004812.1 + 60208 0.66 0.989396
Target:  5'- cGUGCaGaCGGCCUCGccgcucccgAACUccaucucgaUCGUgGGCCg -3'
miRNA:   3'- -CAUG-C-GCCGGAGC---------UUGA---------AGCAgUUGG- -5'
21434 5' -51.9 NC_004812.1 + 127756 0.66 0.989396
Target:  5'- -gGCGCGGCggCGGGgUccgCGUCGGCg -3'
miRNA:   3'- caUGCGCCGgaGCUUgAa--GCAGUUGg -5'
21434 5' -51.9 NC_004812.1 + 12919 0.66 0.989396
Target:  5'- -gGCGCGGCgagcgCUCGAGCg-CGaCGAUCg -3'
miRNA:   3'- caUGCGCCG-----GAGCUUGaaGCaGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 2248 0.66 0.989396
Target:  5'- -gGCGCGGCggCGGGgUccgCGUCGGCg -3'
miRNA:   3'- caUGCGCCGgaGCUUgAa--GCAGUUGg -5'
21434 5' -51.9 NC_004812.1 + 25758 0.66 0.989396
Target:  5'- --cCGgGGCCcccacUUGAGCgucgaggccgUCGUCAGCCc -3'
miRNA:   3'- cauGCgCCGG-----AGCUUGa---------AGCAGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 54559 0.66 0.989396
Target:  5'- -gGCGCGGCCcCGGcCUcgccaucguuaUCGUCAuCUg -3'
miRNA:   3'- caUGCGCCGGaGCUuGA-----------AGCAGUuGG- -5'
21434 5' -51.9 NC_004812.1 + 117939 0.66 0.989396
Target:  5'- gGUGCGaUGGaCCU-GAcCUUCGUCAugCc -3'
miRNA:   3'- -CAUGC-GCC-GGAgCUuGAAGCAGUugG- -5'
21434 5' -51.9 NC_004812.1 + 137560 0.66 0.989396
Target:  5'- --cCGCGGUCUCGGcCgcCG-CGGCCg -3'
miRNA:   3'- cauGCGCCGGAGCUuGaaGCaGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 146407 0.66 0.988552
Target:  5'- cGUGCGCGGCC---AGCUccgCGUCGgggcagcaguugcgaACCg -3'
miRNA:   3'- -CAUGCGCCGGagcUUGAa--GCAGU---------------UGG- -5'
21434 5' -51.9 NC_004812.1 + 121815 0.66 0.988552
Target:  5'- -gGgGCGGCCUCGGaggcggaggccgggcGCUUgCGggccgcggCGGCCg -3'
miRNA:   3'- caUgCGCCGGAGCU---------------UGAA-GCa-------GUUGG- -5'
21434 5' -51.9 NC_004812.1 + 152716 0.66 0.988552
Target:  5'- -gGgGCGGCCUCGGaggcggaggccgggcGCUUgCGggccgcggCGGCCg -3'
miRNA:   3'- caUgCGCCGGAGCU---------------UGAA-GCa-------GUUGG- -5'
21434 5' -51.9 NC_004812.1 + 94934 0.66 0.987962
Target:  5'- uGUuCGCGaaccacaucGCCUCGcuCUUCGUCcccgGGCCg -3'
miRNA:   3'- -CAuGCGC---------CGGAGCuuGAAGCAG----UUGG- -5'
21434 5' -51.9 NC_004812.1 + 129459 0.66 0.987962
Target:  5'- -cGCGCGGCCgccagccCGGGCa-CGgCGGCCa -3'
miRNA:   3'- caUGCGCCGGa------GCUUGaaGCaGUUGG- -5'
21434 5' -51.9 NC_004812.1 + 84227 0.66 0.987962
Target:  5'- --cCGCGGCCUgGAggaGCUggCGUcCGACg -3'
miRNA:   3'- cauGCGCCGGAgCU---UGAa-GCA-GUUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.