miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21435 3' -66.6 NC_004812.1 + 135996 0.66 0.393513
Target:  5'- -cGCCCCCGagacgcagucgcaGGCgcgcguccucgccaCCGGCCGGUCCGGu -3'
miRNA:   3'- uuCGGGGGC-------------CCGa-------------GGUCGGUCGGGUU- -5'
21435 3' -66.6 NC_004812.1 + 36615 0.66 0.391086
Target:  5'- -cGCCCCCGcccgucucguGGCgcgCCaccuggAGCUGGCCCAGg -3'
miRNA:   3'- uuCGGGGGC----------CCGa--GG------UCGGUCGGGUU- -5'
21435 3' -66.6 NC_004812.1 + 148018 0.66 0.391086
Target:  5'- cGGCCUCCGGGCggcgcgCCA-CCGGUuCCAu -3'
miRNA:   3'- uUCGGGGGCCCGa-----GGUcGGUCG-GGUu -5'
21435 3' -66.6 NC_004812.1 + 56513 0.66 0.391086
Target:  5'- -cGCCCgCGGauauaaggcGCUCCGGC-GGCCCGg -3'
miRNA:   3'- uuCGGGgGCC---------CGAGGUCGgUCGGGUu -5'
21435 3' -66.6 NC_004812.1 + 138244 0.66 0.391086
Target:  5'- gGGGCCCgCGGGC-CCGGCgCcGCCgGu -3'
miRNA:   3'- -UUCGGGgGCCCGaGGUCG-GuCGGgUu -5'
21435 3' -66.6 NC_004812.1 + 117117 0.66 0.391086
Target:  5'- cGGCCUCCGGGCggcgcgCCA-CCGGUuCCAu -3'
miRNA:   3'- uUCGGGGGCCCGa-----GGUcGGUCG-GGUu -5'
21435 3' -66.6 NC_004812.1 + 74392 0.66 0.391086
Target:  5'- cGGCgCUUCGGcGCgggCCgGGCCAGCCCGc -3'
miRNA:   3'- uUCG-GGGGCC-CGa--GG-UCGGUCGGGUu -5'
21435 3' -66.6 NC_004812.1 + 123532 0.66 0.391086
Target:  5'- aGGGCUCCaUGGGUUCgGGCCGGgcguCCCGGg -3'
miRNA:   3'- -UUCGGGG-GCCCGAGgUCGGUC----GGGUU- -5'
21435 3' -66.6 NC_004812.1 + 154433 0.66 0.391086
Target:  5'- aGGGCUCCaUGGGUUCgGGCCGGgcguCCCGGg -3'
miRNA:   3'- -UUCGGGG-GCCCGAGgUCGGUC----GGGUU- -5'
21435 3' -66.6 NC_004812.1 + 128480 0.66 0.390279
Target:  5'- -cGCCCagcgccgagacgUCGGGCgggccggUCCAguuGCCGGCCCAGg -3'
miRNA:   3'- uuCGGG------------GGCCCG-------AGGU---CGGUCGGGUU- -5'
21435 3' -66.6 NC_004812.1 + 33970 0.66 0.386261
Target:  5'- cGGUCCCCGaGCUCCucuucuaccacugcgAGCC-GCCCGg -3'
miRNA:   3'- uUCGGGGGCcCGAGG---------------UCGGuCGGGUu -5'
21435 3' -66.6 NC_004812.1 + 100654 0.66 0.383067
Target:  5'- cGAGCCgCgCCGGGC-CgGGCCucggcgucgGGCCCGg -3'
miRNA:   3'- -UUCGG-G-GGCCCGaGgUCGG---------UCGGGUu -5'
21435 3' -66.6 NC_004812.1 + 46311 0.66 0.383067
Target:  5'- cGGGCCgCgCGGGCgacagCCGccGCCAGUCCGc -3'
miRNA:   3'- -UUCGGgG-GCCCGa----GGU--CGGUCGGGUu -5'
21435 3' -66.6 NC_004812.1 + 76401 0.66 0.383067
Target:  5'- uGGCCCggCGGGCgCCgagGGCCAGCCgGGu -3'
miRNA:   3'- uUCGGGg-GCCCGaGG---UCGGUCGGgUU- -5'
21435 3' -66.6 NC_004812.1 + 57914 0.66 0.383067
Target:  5'- -cGUCCUCGaGGagcgCCAGCCAGUCCu- -3'
miRNA:   3'- uuCGGGGGC-CCga--GGUCGGUCGGGuu -5'
21435 3' -66.6 NC_004812.1 + 56634 0.66 0.383067
Target:  5'- cGAGCUgCCuGGCccccgCCGGCaCGGCCCAc -3'
miRNA:   3'- -UUCGGgGGcCCGa----GGUCG-GUCGGGUu -5'
21435 3' -66.6 NC_004812.1 + 78063 0.66 0.383067
Target:  5'- cAGCCCCCGGaGCcCCcuuGCggCAGCCUGAc -3'
miRNA:   3'- uUCGGGGGCC-CGaGGu--CG--GUCGGGUU- -5'
21435 3' -66.6 NC_004812.1 + 25040 0.66 0.383067
Target:  5'- uGGGCUCgCGGuGCaCCAGCUcGCCCGAg -3'
miRNA:   3'- -UUCGGGgGCC-CGaGGUCGGuCGGGUU- -5'
21435 3' -66.6 NC_004812.1 + 99573 0.66 0.383067
Target:  5'- gAAGCUCCUGGcccuCUUCGGCCAgGUCCAGa -3'
miRNA:   3'- -UUCGGGGGCCc---GAGGUCGGU-CGGGUU- -5'
21435 3' -66.6 NC_004812.1 + 156160 0.66 0.383067
Target:  5'- -cGCCggcggCCCGGGCUCgCGGCgGGCgCGc -3'
miRNA:   3'- uuCGG-----GGGCCCGAG-GUCGgUCGgGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.