miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 3' -61 NC_004812.1 + 25101 0.66 0.714066
Target:  5'- cCGCCGCGCgccgacgCGCGUUcCGGGgCGUg-- -3'
miRNA:   3'- -GCGGCGCGa------GCGCGA-GCUCaGCGagu -5'
21439 3' -61 NC_004812.1 + 81634 0.66 0.714066
Target:  5'- aGCaCGCGCggCGCGUcuUCGAGgCGCa-- -3'
miRNA:   3'- gCG-GCGCGa-GCGCG--AGCUCaGCGagu -5'
21439 3' -61 NC_004812.1 + 27360 0.66 0.714066
Target:  5'- gCGCCGCuGCUgGCGCgCGgcccgcgccaGGUgCGCUCc -3'
miRNA:   3'- -GCGGCG-CGAgCGCGaGC----------UCA-GCGAGu -5'
21439 3' -61 NC_004812.1 + 48031 0.66 0.714066
Target:  5'- gGCCGCGCUgcccgagcggggCGCGCgccaccagCGAG-CGCa-- -3'
miRNA:   3'- gCGGCGCGA------------GCGCGa-------GCUCaGCGagu -5'
21439 3' -61 NC_004812.1 + 83207 0.66 0.714066
Target:  5'- gCGCgGCgGC-CGCGCUCGGGggC-CUCGg -3'
miRNA:   3'- -GCGgCG-CGaGCGCGAGCUCa-GcGAGU- -5'
21439 3' -61 NC_004812.1 + 109282 0.66 0.704453
Target:  5'- uCGcCCGuUGCUCGCGCUUGcuggcgguGUCGCcCGa -3'
miRNA:   3'- -GC-GGC-GCGAGCGCGAGCu-------CAGCGaGU- -5'
21439 3' -61 NC_004812.1 + 59679 0.66 0.704453
Target:  5'- gCGCCGCGUUgcCGCGCgcgCGAGggagaGCg-- -3'
miRNA:   3'- -GCGGCGCGA--GCGCGa--GCUCag---CGagu -5'
21439 3' -61 NC_004812.1 + 29471 0.66 0.694784
Target:  5'- gGCCGCGCgggacccgCGCGCaCG-GUCcCUCGc -3'
miRNA:   3'- gCGGCGCGa-------GCGCGaGCuCAGcGAGU- -5'
21439 3' -61 NC_004812.1 + 83288 0.66 0.694784
Target:  5'- gCGCgGCGCUggcCGCGCUguGGUCGUgCAu -3'
miRNA:   3'- -GCGgCGCGA---GCGCGAgcUCAGCGaGU- -5'
21439 3' -61 NC_004812.1 + 84740 0.66 0.694784
Target:  5'- gCGCCGUGCgCGCGCUCcugcagGGGaUCGUgCGg -3'
miRNA:   3'- -GCGGCGCGaGCGCGAG------CUC-AGCGaGU- -5'
21439 3' -61 NC_004812.1 + 101983 0.66 0.694784
Target:  5'- cCGCCGC-C-CGCGCgggGGGUCGCg-- -3'
miRNA:   3'- -GCGGCGcGaGCGCGag-CUCAGCGagu -5'
21439 3' -61 NC_004812.1 + 154979 0.66 0.694784
Target:  5'- gGCCGCGCgggacccgCGCGCaCG-GUCcCUCGc -3'
miRNA:   3'- gCGGCGCGa-------GCGCGaGCuCAGcGAGU- -5'
21439 3' -61 NC_004812.1 + 39233 0.66 0.685066
Target:  5'- gCGCCGcCGC-CGCGCUgcCGGG-CGCg-- -3'
miRNA:   3'- -GCGGC-GCGaGCGCGA--GCUCaGCGagu -5'
21439 3' -61 NC_004812.1 + 108370 0.66 0.685066
Target:  5'- uCGCCGCGCUgcaggaggcccUGgGCcgCGGGgcucCGCUCGc -3'
miRNA:   3'- -GCGGCGCGA-----------GCgCGa-GCUCa---GCGAGU- -5'
21439 3' -61 NC_004812.1 + 79118 0.66 0.685066
Target:  5'- uGCCGCGCggaucgcCGCGUUCuGGUCGg-CAg -3'
miRNA:   3'- gCGGCGCGa------GCGCGAGcUCAGCgaGU- -5'
21439 3' -61 NC_004812.1 + 8332 0.66 0.685066
Target:  5'- gCGCCGcCGC-CGCGCUgcCGGG-CGCg-- -3'
miRNA:   3'- -GCGGC-GCGaGCGCGA--GCUCaGCGagu -5'
21439 3' -61 NC_004812.1 + 143449 0.66 0.685066
Target:  5'- aGCUGCGCguguugucUCGCGCgUCGcuGUCGC-CGg -3'
miRNA:   3'- gCGGCGCG--------AGCGCG-AGCu-CAGCGaGU- -5'
21439 3' -61 NC_004812.1 + 17903 0.66 0.685066
Target:  5'- cCGCCGCGCcCGCGgUCGuccgggCGCg-- -3'
miRNA:   3'- -GCGGCGCGaGCGCgAGCuca---GCGagu -5'
21439 3' -61 NC_004812.1 + 16501 0.66 0.685066
Target:  5'- gCGuCCGUGCUgCGCGCgcccgccaUGGGcgCGCUCAu -3'
miRNA:   3'- -GC-GGCGCGA-GCGCGa-------GCUCa-GCGAGU- -5'
21439 3' -61 NC_004812.1 + 105052 0.66 0.682142
Target:  5'- gGCUGCGCgUGCGCUCGccgggacggccuggGGUcugccgggCGCUCGu -3'
miRNA:   3'- gCGGCGCGaGCGCGAGC--------------UCA--------GCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.