Results 41 - 60 of 515 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21439 | 5' | -56 | NC_004812.1 | + | 23483 | 0.66 | 0.910642 |
Target: 5'- -cUGGCG-GUgGUCGAgGGGCugcuGUCGCa -3' miRNA: 3'- aaACUGCuCGgCGGCUgCCUG----UAGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 138712 | 0.66 | 0.898206 |
Target: 5'- --gGACGAccGCgGCgCGGCGGGCc-CGCg -3' miRNA: 3'- aaaCUGCU--CGgCG-GCUGCCUGuaGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 106715 | 0.66 | 0.891641 |
Target: 5'- -cUGcGCGuGCUGCUGGCGGGCGaggGCg -3' miRNA: 3'- aaAC-UGCuCGGCGGCUGCCUGUag-CG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 151866 | 0.66 | 0.910642 |
Target: 5'- --cGcCGAGCCGCCGccccCGGGg--CGCg -3' miRNA: 3'- aaaCuGCUCGGCGGCu---GCCUguaGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 129556 | 0.66 | 0.910642 |
Target: 5'- --cGGCG-GCgGCCG-CGG-CGUCGUc -3' miRNA: 3'- aaaCUGCuCGgCGGCuGCCuGUAGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 76742 | 0.66 | 0.910642 |
Target: 5'- ---aGCGcGGCCGCCGuguCGGcCGUCGg -3' miRNA: 3'- aaacUGC-UCGGCGGCu--GCCuGUAGCg -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 60310 | 0.66 | 0.916509 |
Target: 5'- cUUGGgGgccuugcccuGGCCGCCGuCGaGCAUCGUg -3' miRNA: 3'- aAACUgC----------UCGGCGGCuGCcUGUAGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 41635 | 0.66 | 0.898206 |
Target: 5'- -cUGACGucAG-CGCCGAgGccGACGUCGCc -3' miRNA: 3'- aaACUGC--UCgGCGGCUgC--CUGUAGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 46793 | 0.66 | 0.891641 |
Target: 5'- --cGGuCGAGCCGgUGcUGGGCAUCGa -3' miRNA: 3'- aaaCU-GCUCGGCgGCuGCCUGUAGCg -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 26722 | 0.66 | 0.916509 |
Target: 5'- --aGGCGcGUCGCaCGGCGGGCcgUGg -3' miRNA: 3'- aaaCUGCuCGGCG-GCUGCCUGuaGCg -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 142065 | 0.66 | 0.898206 |
Target: 5'- --cGACGAGcCCGCCcccGCGG---UCGCg -3' miRNA: 3'- aaaCUGCUC-GGCGGc--UGCCuguAGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 79164 | 0.66 | 0.891641 |
Target: 5'- --gGugGuGUCgGCCGGCGGACAggucuUCGa -3' miRNA: 3'- aaaCugCuCGG-CGGCUGCCUGU-----AGCg -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 100830 | 0.66 | 0.89756 |
Target: 5'- -cUGACGAccgcgggGCUGCCcAgGGGCAgggCGCg -3' miRNA: 3'- aaACUGCU-------CGGCGGcUgCCUGUa--GCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 6202 | 0.66 | 0.898206 |
Target: 5'- --gGGCGcccGGCgGCCcGCGGACGcCGCc -3' miRNA: 3'- aaaCUGC---UCGgCGGcUGCCUGUaGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 131168 | 0.66 | 0.90454 |
Target: 5'- ---cGCGu-CCGCCGGgGGGCGUCGg -3' miRNA: 3'- aaacUGCucGGCGGCUgCCUGUAGCg -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 10714 | 0.66 | 0.914774 |
Target: 5'- --aGGCG-GCCGCCGuucccuccacgcucGCGGuCcUCGCc -3' miRNA: 3'- aaaCUGCuCGGCGGC--------------UGCCuGuAGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 84637 | 0.66 | 0.898206 |
Target: 5'- -cUGGCGAcGCCGCgccaGACGGcCAccaCGCu -3' miRNA: 3'- aaACUGCU-CGGCGg---CUGCCuGUa--GCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 97161 | 0.66 | 0.90454 |
Target: 5'- gUUGAUcgccgGGGUCGUCGugGGGguCGUCGUc -3' miRNA: 3'- aAACUG-----CUCGGCGGCugCCU--GUAGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 9768 | 0.66 | 0.891641 |
Target: 5'- ---cGCG-GCgCGCCGGCGG-CcgCGCg -3' miRNA: 3'- aaacUGCuCG-GCGGCUGCCuGuaGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 115270 | 0.66 | 0.910642 |
Target: 5'- --gGACucgaGGCCGUCGugGG-CGUCGa -3' miRNA: 3'- aaaCUGc---UCGGCGGCugCCuGUAGCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home