miRNA display CGI


Results 61 - 80 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 121457 0.66 0.898206
Target:  5'- --cGA-GGGCCcCuCGACGGACGUgCGCc -3'
miRNA:   3'- aaaCUgCUCGGcG-GCUGCCUGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 54519 0.66 0.92214
Target:  5'- -gUGGCcGGCC-UCGACGGACG-CGUu -3'
miRNA:   3'- aaACUGcUCGGcGGCUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 22974 0.66 0.92214
Target:  5'- --cGGCGAcGCUgauGCUGGCGGugGcCGCc -3'
miRNA:   3'- aaaCUGCU-CGG---CGGCUGCCugUaGCG- -5'
21439 5' -56 NC_004812.1 + 147 0.66 0.891641
Target:  5'- -gUGGCGccgcGCCGCCGcgcccGCGGcccGCcgCGCg -3'
miRNA:   3'- aaACUGCu---CGGCGGC-----UGCC---UGuaGCG- -5'
21439 5' -56 NC_004812.1 + 154616 0.66 0.916509
Target:  5'- ---aGCGA-CCGCCGGCGGGaccCGCc -3'
miRNA:   3'- aaacUGCUcGGCGGCUGCCUguaGCG- -5'
21439 5' -56 NC_004812.1 + 82686 0.66 0.924326
Target:  5'- --gGGCGAGCaggCGCCGcUGGGCGccggccgacggcggcUCGCc -3'
miRNA:   3'- aaaCUGCUCG---GCGGCuGCCUGU---------------AGCG- -5'
21439 5' -56 NC_004812.1 + 8595 0.66 0.92214
Target:  5'- -gUGGCGcGCCGCC--CGGAgGcCGCg -3'
miRNA:   3'- aaACUGCuCGGCGGcuGCCUgUaGCG- -5'
21439 5' -56 NC_004812.1 + 26722 0.66 0.916509
Target:  5'- --aGGCGcGUCGCaCGGCGGGCcgUGg -3'
miRNA:   3'- aaaCUGCuCGGCG-GCUGCCUGuaGCg -5'
21439 5' -56 NC_004812.1 + 103219 0.66 0.92214
Target:  5'- --gGACGAGCggcagguucaggCGCUcGCGGACGuaguugaucUCGCg -3'
miRNA:   3'- aaaCUGCUCG------------GCGGcUGCCUGU---------AGCG- -5'
21439 5' -56 NC_004812.1 + 81748 0.66 0.891641
Target:  5'- --gGACG-GCCGCCcuGCGG-CGcUCGCu -3'
miRNA:   3'- aaaCUGCuCGGCGGc-UGCCuGU-AGCG- -5'
21439 5' -56 NC_004812.1 + 106201 0.66 0.92214
Target:  5'- ----cCGGGUggcuaUGCCGACGGACuucugCGCg -3'
miRNA:   3'- aaacuGCUCG-----GCGGCUGCCUGua---GCG- -5'
21439 5' -56 NC_004812.1 + 114477 0.66 0.891641
Target:  5'- --gGGCGuGGCCGCCGggggaagggcgGCGGGCGaCGg -3'
miRNA:   3'- aaaCUGC-UCGGCGGC-----------UGCCUGUaGCg -5'
21439 5' -56 NC_004812.1 + 45308 0.66 0.92214
Target:  5'- gUUGGCGGGCagGCCGAgcaGGGCGgucUUGUu -3'
miRNA:   3'- aAACUGCUCGg-CGGCUg--CCUGU---AGCG- -5'
21439 5' -56 NC_004812.1 + 37103 0.66 0.898206
Target:  5'- --gGGCGcccGGCgGCCcGCGGACGcCGCc -3'
miRNA:   3'- aaaCUGC---UCGgCGGcUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 44209 0.66 0.898206
Target:  5'- --cGGCGGcGgCGCgGACGGGCGaaCGCg -3'
miRNA:   3'- aaaCUGCU-CgGCGgCUGCCUGUa-GCG- -5'
21439 5' -56 NC_004812.1 + 89270 0.66 0.898206
Target:  5'- --gGACGcgcaGGCCGCgGcGCGGcgcggagccccgGCGUCGCg -3'
miRNA:   3'- aaaCUGC----UCGGCGgC-UGCC------------UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 78406 0.66 0.898206
Target:  5'- --cGACGcGCaugacccuCGCCGACGuGGCggCGCa -3'
miRNA:   3'- aaaCUGCuCG--------GCGGCUGC-CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 96492 0.66 0.916509
Target:  5'- --gGACGccGCCGCCagcGGCGGACccUGCc -3'
miRNA:   3'- aaaCUGCu-CGGCGG---CUGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 156557 0.66 0.891641
Target:  5'- -gUGGCGccgcGCCGCCGcgcccGCGGcccGCcgCGCg -3'
miRNA:   3'- aaACUGCu---CGGCGGC-----UGCC---UGuaGCG- -5'
21439 5' -56 NC_004812.1 + 69804 0.66 0.90454
Target:  5'- --gGACGGGaaaCGUCGACGGGgGccgaggggguUCGCc -3'
miRNA:   3'- aaaCUGCUCg--GCGGCUGCCUgU----------AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.