miRNA display CGI


Results 101 - 120 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 63012 0.66 0.92214
Target:  5'- ---cGCGGGCCGCCGcguccGCGaGCG-CGCg -3'
miRNA:   3'- aaacUGCUCGGCGGC-----UGCcUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 133739 0.66 0.921588
Target:  5'- gUUGGCgGGGCCauaagagGCCG-CGGACG-CGUa -3'
miRNA:   3'- aAACUG-CUCGG-------CGGCuGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 102054 0.66 0.92214
Target:  5'- -aUGGCGAgGCCgggGCCGcgcCGGGCG-CGCc -3'
miRNA:   3'- aaACUGCU-CGG---CGGCu--GCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 101168 0.66 0.90454
Target:  5'- -cUGACG-GCCGCgGcGgGGACgGUCGUg -3'
miRNA:   3'- aaACUGCuCGGCGgC-UgCCUG-UAGCG- -5'
21439 5' -56 NC_004812.1 + 51097 0.66 0.910042
Target:  5'- -aUGACG-GCCgcacacccacucgGCCGcCGGGCccgGUCGCc -3'
miRNA:   3'- aaACUGCuCGG-------------CGGCuGCCUG---UAGCG- -5'
21439 5' -56 NC_004812.1 + 106201 0.66 0.92214
Target:  5'- ----cCGGGUggcuaUGCCGACGGACuucugCGCg -3'
miRNA:   3'- aaacuGCUCG-----GCGGCUGCCUGua---GCG- -5'
21439 5' -56 NC_004812.1 + 22974 0.66 0.92214
Target:  5'- --cGGCGAcGCUgauGCUGGCGGugGcCGCc -3'
miRNA:   3'- aaaCUGCU-CGG---CGGCUGCCugUaGCG- -5'
21439 5' -56 NC_004812.1 + 28576 0.66 0.916509
Target:  5'- --cGGCcGGCaGCUGGCGGACGaCGUg -3'
miRNA:   3'- aaaCUGcUCGgCGGCUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 71387 0.66 0.916509
Target:  5'- --gGACGGGCga--GGCGGGgGUCGCa -3'
miRNA:   3'- aaaCUGCUCGgcggCUGCCUgUAGCG- -5'
21439 5' -56 NC_004812.1 + 129001 0.66 0.92214
Target:  5'- --cGGCGGGCCGCgGgcGCGGGCccGggGCc -3'
miRNA:   3'- aaaCUGCUCGGCGgC--UGCCUG--UagCG- -5'
21439 5' -56 NC_004812.1 + 108628 0.66 0.92214
Target:  5'- --aGGCGcgcgugcuGGCCGCCuaccGGCGGGCGUacuacggcagCGCg -3'
miRNA:   3'- aaaCUGC--------UCGGCGG----CUGCCUGUA----------GCG- -5'
21439 5' -56 NC_004812.1 + 106027 0.66 0.900767
Target:  5'- --cGGCGAucccggccuGCCGCCGGCGcucGGCcacgaggcuccagcgGUCGCg -3'
miRNA:   3'- aaaCUGCU---------CGGCGGCUGC---CUG---------------UAGCG- -5'
21439 5' -56 NC_004812.1 + 43522 0.66 0.910642
Target:  5'- --cGugGGuCCGCCGcgGCGG-UGUCGCg -3'
miRNA:   3'- aaaCugCUcGGCGGC--UGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 108277 0.66 0.92214
Target:  5'- --cGGCGuccGCCGCCGuuGCGGccucggccgcgGCGUCGg -3'
miRNA:   3'- aaaCUGCu--CGGCGGC--UGCC-----------UGUAGCg -5'
21439 5' -56 NC_004812.1 + 51747 0.66 0.910642
Target:  5'- --cGACGAccgccgcgGCCGCCGGCGcGGCcaagaGCc -3'
miRNA:   3'- aaaCUGCU--------CGGCGGCUGC-CUGuag--CG- -5'
21439 5' -56 NC_004812.1 + 26358 0.66 0.910642
Target:  5'- --cGcCGAGCCGCCGccccCGGGg--CGCg -3'
miRNA:   3'- aaaCuGCUCGGCGGCu---GCCUguaGCG- -5'
21439 5' -56 NC_004812.1 + 77152 0.67 0.870607
Target:  5'- --gGGCGGgcccccGCCGCCGcGCGGAaggCGCc -3'
miRNA:   3'- aaaCUGCU------CGGCGGC-UGCCUguaGCG- -5'
21439 5' -56 NC_004812.1 + 4858 0.67 0.870607
Target:  5'- --cGGCGGcGCgGCCGugaaGCGGcccgugGCGUCGCg -3'
miRNA:   3'- aaaCUGCU-CGgCGGC----UGCC------UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 124376 0.67 0.870607
Target:  5'- --cGGCGGaCCGCCcGCGGACcgccCGCg -3'
miRNA:   3'- aaaCUGCUcGGCGGcUGCCUGua--GCG- -5'
21439 5' -56 NC_004812.1 + 125254 0.67 0.870607
Target:  5'- --aGGCGcGCCGgCGGCccGGGC-UCGCg -3'
miRNA:   3'- aaaCUGCuCGGCgGCUG--CCUGuAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.