miRNA display CGI


Results 121 - 140 of 515 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 141775 0.67 0.877838
Target:  5'- --cGGCGucgaacGGCCGCgCGgggggGCGGGCcgCGCg -3'
miRNA:   3'- aaaCUGC------UCGGCG-GC-----UGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 27137 0.67 0.877838
Target:  5'- --cGGCGAccugGCCGCCGugccCGGGCuggcggccgCGCg -3'
miRNA:   3'- aaaCUGCU----CGGCGGCu---GCCUGua-------GCG- -5'
21439 5' -56 NC_004812.1 + 2477 0.67 0.884851
Target:  5'- ----cCGGGgCGCCGGCGGcgGCGgccUCGCg -3'
miRNA:   3'- aaacuGCUCgGCGGCUGCC--UGU---AGCG- -5'
21439 5' -56 NC_004812.1 + 104269 0.67 0.884851
Target:  5'- ---aACGAcCCGCCGggGCGGGCcgCGUa -3'
miRNA:   3'- aaacUGCUcGGCGGC--UGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 10573 0.67 0.884851
Target:  5'- --cGGCGAGCggUGCCGG-GGGCAUuuaUGCg -3'
miRNA:   3'- aaaCUGCUCG--GCGGCUgCCUGUA---GCG- -5'
21439 5' -56 NC_004812.1 + 49224 0.67 0.884851
Target:  5'- --gGGCGGuGCCGuCCGAgGcGAUcgCGCg -3'
miRNA:   3'- aaaCUGCU-CGGC-GGCUgC-CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 108344 0.67 0.884851
Target:  5'- -cUGucgcuuCGAGCgCGCgGACG-ACGUCGCc -3'
miRNA:   3'- aaACu-----GCUCG-GCGgCUGCcUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 100373 0.67 0.863164
Target:  5'- --cGGCGcccGCCGCCGGgGGGCG-CGa -3'
miRNA:   3'- aaaCUGCu--CGGCGGCUgCCUGUaGCg -5'
21439 5' -56 NC_004812.1 + 65073 0.67 0.863164
Target:  5'- --cGGCG-GCCGCCGcCGcccuGGCcgCGCg -3'
miRNA:   3'- aaaCUGCuCGGCGGCuGC----CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 95532 0.67 0.863164
Target:  5'- --cGGCGGgGCgGCCcg-GGGCGUCGCg -3'
miRNA:   3'- aaaCUGCU-CGgCGGcugCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 41960 0.67 0.863164
Target:  5'- -gUGGCGGGCCGCacCGACGuccuCAUCa- -3'
miRNA:   3'- aaACUGCUCGGCG--GCUGCcu--GUAGcg -5'
21439 5' -56 NC_004812.1 + 154974 0.67 0.877838
Target:  5'- --gGGCGGGCCGCgCG--GGACccgCGCg -3'
miRNA:   3'- aaaCUGCUCGGCG-GCugCCUGua-GCG- -5'
21439 5' -56 NC_004812.1 + 79892 0.67 0.855514
Target:  5'- --cGGCGAaaaaGUCGUgGGCgGGGCAUUGCg -3'
miRNA:   3'- aaaCUGCU----CGGCGgCUG-CCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 2551 0.67 0.855514
Target:  5'- --cGACGAcGCCGCCGcCGu-CGUCGa -3'
miRNA:   3'- aaaCUGCU-CGGCGGCuGCcuGUAGCg -5'
21439 5' -56 NC_004812.1 + 74081 0.67 0.877838
Target:  5'- ---cGCGGGCCGCCu-CGGcccGCAUCaGCa -3'
miRNA:   3'- aaacUGCUCGGCGGcuGCC---UGUAG-CG- -5'
21439 5' -56 NC_004812.1 + 116156 0.67 0.884851
Target:  5'- --aGACGGGCCGCCcGuACGccccgcucuGCGUUGCg -3'
miRNA:   3'- aaaCUGCUCGGCGG-C-UGCc--------UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 94312 0.67 0.884851
Target:  5'- cUUGGuCGccGGCUGCgCGGCGGugAcCGCg -3'
miRNA:   3'- aAACU-GC--UCGGCG-GCUGCCugUaGCG- -5'
21439 5' -56 NC_004812.1 + 128862 0.67 0.884851
Target:  5'- ---uGCGGGCCGCgGGCGGcccGCugacCGCg -3'
miRNA:   3'- aaacUGCUCGGCGgCUGCC---UGua--GCG- -5'
21439 5' -56 NC_004812.1 + 135498 0.67 0.884851
Target:  5'- --aGGCccaGGCCGCCGACacggaGGAgGUCGg -3'
miRNA:   3'- aaaCUGc--UCGGCGGCUG-----CCUgUAGCg -5'
21439 5' -56 NC_004812.1 + 141520 0.67 0.884851
Target:  5'- --aGGCGcucgGGCUcgaGCCGGCGGGCggcgacguGUCGCc -3'
miRNA:   3'- aaaCUGC----UCGG---CGGCUGCCUG--------UAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.