miRNA display CGI


Results 141 - 160 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 108344 0.67 0.884851
Target:  5'- -cUGucgcuuCGAGCgCGCgGACG-ACGUCGCc -3'
miRNA:   3'- aaACu-----GCUCG-GCGgCUGCcUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 112993 0.67 0.884851
Target:  5'- --cGGCGccgcGGCCGCCGAggcagaGGACGcagaCGCg -3'
miRNA:   3'- aaaCUGC----UCGGCGGCUg-----CCUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 127985 0.67 0.884851
Target:  5'- ----cCGGGgCGCCGGCGGcgGCGgccUCGCg -3'
miRNA:   3'- aaacuGCUCgGCGGCUGCC--UGU---AGCG- -5'
21439 5' -56 NC_004812.1 + 149023 0.67 0.884851
Target:  5'- --cGGCGGcGCCggcuuuauGCCGGCGGugGggGCg -3'
miRNA:   3'- aaaCUGCU-CGG--------CGGCUGCCugUagCG- -5'
21439 5' -56 NC_004812.1 + 54197 0.67 0.884851
Target:  5'- -aUGACGcuugagacGCCGCCcGCGGGCgcuuccGUCGUg -3'
miRNA:   3'- aaACUGCu-------CGGCGGcUGCCUG------UAGCG- -5'
21439 5' -56 NC_004812.1 + 26984 0.67 0.884851
Target:  5'- --cGACGAGggccCCGCCGGCgccggggaGGACGgcccCGCc -3'
miRNA:   3'- aaaCUGCUC----GGCGGCUG--------CCUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 18349 0.67 0.877838
Target:  5'- --cGGCGcgcgaccgcGGCCGCCG-CGG-CGUaCGCg -3'
miRNA:   3'- aaaCUGC---------UCGGCGGCuGCCuGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 152493 0.67 0.884851
Target:  5'- --cGACGAGggccCCGCCGGCgccggggaGGACGgcccCGCc -3'
miRNA:   3'- aaaCUGCUC----GGCGGCUG--------CCUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 155157 0.67 0.870607
Target:  5'- --cGGCGucGCCGCCGugccCGGcCcUCGCg -3'
miRNA:   3'- aaaCUGCu-CGGCGGCu---GCCuGuAGCG- -5'
21439 5' -56 NC_004812.1 + 85082 0.67 0.884159
Target:  5'- --cGACGccagggaGGCCGCCGA-GGcCGUcCGCa -3'
miRNA:   3'- aaaCUGC-------UCGGCGGCUgCCuGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 60402 0.67 0.870607
Target:  5'- --gGGCG-GCCGCCcGCGcGACcgCGUc -3'
miRNA:   3'- aaaCUGCuCGGCGGcUGC-CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 124376 0.67 0.870607
Target:  5'- --cGGCGGaCCGCCcGCGGACcgccCGCg -3'
miRNA:   3'- aaaCUGCUcGGCGGcUGCCUGua--GCG- -5'
21439 5' -56 NC_004812.1 + 48997 0.67 0.884851
Target:  5'- ---aAUGcGCCGCCuGGCGGACA-CGUg -3'
miRNA:   3'- aaacUGCuCGGCGG-CUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 109429 0.67 0.877838
Target:  5'- --cGGCGGGCCcccgaggcccGCCGAgGGAgAgggcggCGCg -3'
miRNA:   3'- aaaCUGCUCGG----------CGGCUgCCUgUa-----GCG- -5'
21439 5' -56 NC_004812.1 + 121635 0.67 0.877838
Target:  5'- --aGGCGGcGCgGCCGGCGGAgGaggaGCg -3'
miRNA:   3'- aaaCUGCU-CGgCGGCUGCCUgUag--CG- -5'
21439 5' -56 NC_004812.1 + 18356 0.67 0.877838
Target:  5'- --cGACcgcGGCCGCCG-CGG-CGUaCGCg -3'
miRNA:   3'- aaaCUGc--UCGGCGGCuGCCuGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 129274 0.67 0.877838
Target:  5'- --cGGCGGcGCCGgCGACGaGGCugacggCGCg -3'
miRNA:   3'- aaaCUGCU-CGGCgGCUGC-CUGua----GCG- -5'
21439 5' -56 NC_004812.1 + 154974 0.67 0.877838
Target:  5'- --gGGCGGGCCGCgCG--GGACccgCGCg -3'
miRNA:   3'- aaaCUGCUCGGCG-GCugCCUGua-GCG- -5'
21439 5' -56 NC_004812.1 + 74081 0.67 0.877838
Target:  5'- ---cGCGGGCCGCCu-CGGcccGCAUCaGCa -3'
miRNA:   3'- aaacUGCUCGGCGGcuGCC---UGUAG-CG- -5'
21439 5' -56 NC_004812.1 + 152646 0.67 0.877838
Target:  5'- --cGGCGAccugGCCGCCGugccCGGGCuggcggccgCGCg -3'
miRNA:   3'- aaaCUGCU----CGGCGGCu---GCCUGua-------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.