miRNA display CGI


Results 161 - 180 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 25326 0.67 0.886227
Target:  5'- --cGGCGAGCgcgucgccaccaGCCGGCGGugGgcggcgaccacgggcUCGCc -3'
miRNA:   3'- aaaCUGCUCGg-----------CGGCUGCCugU---------------AGCG- -5'
21439 5' -56 NC_004812.1 + 48997 0.67 0.884851
Target:  5'- ---aAUGcGCCGCCuGGCGGACA-CGUg -3'
miRNA:   3'- aaacUGCuCGGCGG-CUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 18349 0.67 0.877838
Target:  5'- --cGGCGcgcgaccgcGGCCGCCG-CGG-CGUaCGCg -3'
miRNA:   3'- aaaCUGC---------UCGGCGGCuGCCuGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 129274 0.67 0.877838
Target:  5'- --cGGCGGcGCCGgCGACGaGGCugacggCGCg -3'
miRNA:   3'- aaaCUGCU-CGGCgGCUGC-CUGua----GCG- -5'
21439 5' -56 NC_004812.1 + 83378 0.67 0.863164
Target:  5'- --gGGCGGGCCGCCcgcccGACccgcaGGGCGgcCGCg -3'
miRNA:   3'- aaaCUGCUCGGCGG-----CUG-----CCUGUa-GCG- -5'
21439 5' -56 NC_004812.1 + 39999 0.67 0.877838
Target:  5'- --aGGCGAGCgGCCGcgacagACGcGGCGgccCGCg -3'
miRNA:   3'- aaaCUGCUCGgCGGC------UGC-CUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 75257 0.67 0.877838
Target:  5'- ---cACG-GCCGCCcuGGCGGGCcugCGCg -3'
miRNA:   3'- aaacUGCuCGGCGG--CUGCCUGua-GCG- -5'
21439 5' -56 NC_004812.1 + 29466 0.67 0.877838
Target:  5'- --gGGCGGGCCGCgCG--GGACccgCGCg -3'
miRNA:   3'- aaaCUGCUCGGCG-GCugCCUGua-GCG- -5'
21439 5' -56 NC_004812.1 + 3766 0.67 0.877838
Target:  5'- --cGGCGGcGCCGgCGACGaGGCugacggCGCg -3'
miRNA:   3'- aaaCUGCU-CGGCgGCUGC-CUGua----GCG- -5'
21439 5' -56 NC_004812.1 + 152536 0.67 0.877838
Target:  5'- --aGGCGGcGCgGCCGGCGGAgGaggaGCg -3'
miRNA:   3'- aaaCUGCU-CGgCGGCUGCCUgUag--CG- -5'
21439 5' -56 NC_004812.1 + 138264 0.67 0.877838
Target:  5'- --cGGCGGccgcggucGCgCGCCGcgcccugcggGCGGugGUCGCg -3'
miRNA:   3'- aaaCUGCU--------CG-GCGGC----------UGCCugUAGCG- -5'
21439 5' -56 NC_004812.1 + 156228 0.67 0.870607
Target:  5'- --gGGCGGGgCGCCG-CGGGaugCGCc -3'
miRNA:   3'- aaaCUGCUCgGCGGCuGCCUguaGCG- -5'
21439 5' -56 NC_004812.1 + 156155 0.67 0.870607
Target:  5'- --aGGCGcGCCGgCGGCccGGGC-UCGCg -3'
miRNA:   3'- aaaCUGCuCGGCgGCUG--CCUGuAGCG- -5'
21439 5' -56 NC_004812.1 + 155157 0.67 0.870607
Target:  5'- --cGGCGucGCCGCCGugccCGGcCcUCGCg -3'
miRNA:   3'- aaaCUGCu-CGGCGGCu---GCCuGuAGCG- -5'
21439 5' -56 NC_004812.1 + 5965 0.67 0.877838
Target:  5'- --cGGgGAgGCCGCgGGgGGGCgaGUCGCg -3'
miRNA:   3'- aaaCUgCU-CGGCGgCUgCCUG--UAGCG- -5'
21439 5' -56 NC_004812.1 + 29649 0.67 0.870607
Target:  5'- --cGGCGucGCCGCCGugccCGGcCcUCGCg -3'
miRNA:   3'- aaaCUGCu-CGGCGGCu---GCCuGuAGCG- -5'
21439 5' -56 NC_004812.1 + 4858 0.67 0.870607
Target:  5'- --cGGCGGcGCgGCCGugaaGCGGcccgugGCGUCGCg -3'
miRNA:   3'- aaaCUGCU-CGgCGGC----UGCC------UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 77152 0.67 0.870607
Target:  5'- --gGGCGGgcccccGCCGCCGcGCGGAaggCGCc -3'
miRNA:   3'- aaaCUGCU------CGGCGGC-UGCCUguaGCG- -5'
21439 5' -56 NC_004812.1 + 133064 0.67 0.863164
Target:  5'- --cGACGAuGCCGgCGGCGG-CGauggCGCc -3'
miRNA:   3'- aaaCUGCU-CGGCgGCUGCCuGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 46349 0.67 0.873525
Target:  5'- ---cACGAGCCGCCcugcugcagguaaacGAUGG-CGUUGCc -3'
miRNA:   3'- aaacUGCUCGGCGG---------------CUGCCuGUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.