miRNA display CGI


Results 61 - 80 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 47607 0.73 0.529288
Target:  5'- --cGAcccCGAGCgCGCCGACGGGC-UCGg -3'
miRNA:   3'- aaaCU---GCUCG-GCGGCUGCCUGuAGCg -5'
21439 5' -56 NC_004812.1 + 142204 0.73 0.579194
Target:  5'- --gGGCuGGCCGCCGGCGu-CGUCGUg -3'
miRNA:   3'- aaaCUGcUCGGCGGCUGCcuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 96142 0.72 0.606582
Target:  5'- -cUGGCcggccuccucuucgGGGCCGUCGugGGGCccGUCGCc -3'
miRNA:   3'- aaACUG--------------CUCGGCGGCugCCUG--UAGCG- -5'
21439 5' -56 NC_004812.1 + 128261 0.72 0.589313
Target:  5'- --cGGCGGGCCa---GCGGACGUCGCa -3'
miRNA:   3'- aaaCUGCUCGGcggcUGCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 15181 0.72 0.589313
Target:  5'- -gUGGCGcGCCGCCcucCGGGCcUCGCu -3'
miRNA:   3'- aaACUGCuCGGCGGcu-GCCUGuAGCG- -5'
21439 5' -56 NC_004812.1 + 61047 0.72 0.589313
Target:  5'- --cGGCGAGaCCGCC-ACGucGGCGUCGCc -3'
miRNA:   3'- aaaCUGCUC-GGCGGcUGC--CUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 123606 0.72 0.630027
Target:  5'- --gGGCGGGCgGgCGGCGGAgGUcCGCu -3'
miRNA:   3'- aaaCUGCUCGgCgGCUGCCUgUA-GCG- -5'
21439 5' -56 NC_004812.1 + 117349 0.72 0.630027
Target:  5'- --cGGCG-GCCGCCGACGcgguggggcGGCcgCGCc -3'
miRNA:   3'- aaaCUGCuCGGCGGCUGC---------CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 153781 0.72 0.609637
Target:  5'- --cGAgGAgugGCCgGCCGACGGGCccgccGUCGCg -3'
miRNA:   3'- aaaCUgCU---CGG-CGGCUGCCUG-----UAGCG- -5'
21439 5' -56 NC_004812.1 + 60918 0.72 0.630027
Target:  5'- --cGACGGGCUGaaGugGGACggCGUg -3'
miRNA:   3'- aaaCUGCUCGGCggCugCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 73144 0.72 0.619827
Target:  5'- --cGGCGcGCCGCCG-CGGACcagcaCGCg -3'
miRNA:   3'- aaaCUGCuCGGCGGCuGCCUGua---GCG- -5'
21439 5' -56 NC_004812.1 + 579 0.72 0.619827
Target:  5'- --cGugGAGCCGCgGGCGcGGCuccgguagCGCg -3'
miRNA:   3'- aaaCugCUCGGCGgCUGC-CUGua------GCG- -5'
21439 5' -56 NC_004812.1 + 46913 0.72 0.609637
Target:  5'- --cGGCGGccGCCGCCGcgGCGGACAcaucCGCc -3'
miRNA:   3'- aaaCUGCU--CGGCGGC--UGCCUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 2753 0.72 0.589313
Target:  5'- --cGGCGGGCCa---GCGGACGUCGCa -3'
miRNA:   3'- aaaCUGCUCGGcggcUGCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 119051 0.72 0.589313
Target:  5'- -gUGGCGGGCUGCCacaucggcacGGCGGACuuucacCGCa -3'
miRNA:   3'- aaACUGCUCGGCGG----------CUGCCUGua----GCG- -5'
21439 5' -56 NC_004812.1 + 134699 0.72 0.599463
Target:  5'- --cGcCGAGCCGCCGGCugcgcgaaccgGGACGUCu- -3'
miRNA:   3'- aaaCuGCUCGGCGGCUG-----------CCUGUAGcg -5'
21439 5' -56 NC_004812.1 + 138426 0.72 0.609637
Target:  5'- --cGGgGGGCUGCCGGCGcccCAUCGCc -3'
miRNA:   3'- aaaCUgCUCGGCGGCUGCcu-GUAGCG- -5'
21439 5' -56 NC_004812.1 + 45727 0.72 0.609637
Target:  5'- --gGACGGccuGCCGCCgGGCGGGCucCGCg -3'
miRNA:   3'- aaaCUGCU---CGGCGG-CUGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 66664 0.72 0.599463
Target:  5'- --aGGCGcGCCGCCGcucGCGGGCcccGUCGUc -3'
miRNA:   3'- aaaCUGCuCGGCGGC---UGCCUG---UAGCG- -5'
21439 5' -56 NC_004812.1 + 43870 0.72 0.609637
Target:  5'- --cGGCGGcGCCGCCGcGCGGu--UCGCg -3'
miRNA:   3'- aaaCUGCU-CGGCGGC-UGCCuguAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.