Results 81 - 100 of 515 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21439 | 5' | -56 | NC_004812.1 | + | 79459 | 0.72 | 0.619827 |
Target: 5'- --gGGCGGGCUGCCGGcCGaGACGcggCGCc -3' miRNA: 3'- aaaCUGCUCGGCGGCU-GC-CUGUa--GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 11986 | 0.72 | 0.619827 |
Target: 5'- --gGGCGGGguuCCGCCGGCGGGCuccggucucCGCg -3' miRNA: 3'- aaaCUGCUC---GGCGGCUGCCUGua-------GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 123606 | 0.72 | 0.630027 |
Target: 5'- --gGGCGGGCgGgCGGCGGAgGUcCGCu -3' miRNA: 3'- aaaCUGCUCGgCgGCUGCCUgUA-GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 117349 | 0.72 | 0.630027 |
Target: 5'- --cGGCG-GCCGCCGACGcgguggggcGGCcgCGCc -3' miRNA: 3'- aaaCUGCuCGGCGGCUGC---------CUGuaGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 60918 | 0.72 | 0.630027 |
Target: 5'- --cGACGGGCUGaaGugGGACggCGUg -3' miRNA: 3'- aaaCUGCUCGGCggCugCCUGuaGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 73144 | 0.72 | 0.619827 |
Target: 5'- --cGGCGcGCCGCCG-CGGACcagcaCGCg -3' miRNA: 3'- aaaCUGCuCGGCGGCuGCCUGua---GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 61047 | 0.72 | 0.589313 |
Target: 5'- --cGGCGAGaCCGCC-ACGucGGCGUCGCc -3' miRNA: 3'- aaaCUGCUC-GGCGGcUGC--CUGUAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 579 | 0.72 | 0.619827 |
Target: 5'- --cGugGAGCCGCgGGCGcGGCuccgguagCGCg -3' miRNA: 3'- aaaCugCUCGGCGgCUGC-CUGua------GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 66664 | 0.72 | 0.599463 |
Target: 5'- --aGGCGcGCCGCCGcucGCGGGCcccGUCGUc -3' miRNA: 3'- aaaCUGCuCGGCGGC---UGCCUG---UAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 45727 | 0.72 | 0.609637 |
Target: 5'- --gGACGGccuGCCGCCgGGCGGGCucCGCg -3' miRNA: 3'- aaaCUGCU---CGGCGG-CUGCCUGuaGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 138426 | 0.72 | 0.609637 |
Target: 5'- --cGGgGGGCUGCCGGCGcccCAUCGCc -3' miRNA: 3'- aaaCUgCUCGGCGGCUGCcu-GUAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 82090 | 0.71 | 0.650424 |
Target: 5'- --gGGCGcguGGCCcggcugGCCGGCGGACAgcagCGCc -3' miRNA: 3'- aaaCUGC---UCGG------CGGCUGCCUGUa---GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 54433 | 0.71 | 0.670762 |
Target: 5'- -gUGGCGccGGUCGgCGGCGGGCAgacguagaaggUCGCg -3' miRNA: 3'- aaACUGC--UCGGCgGCUGCCUGU-----------AGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 68178 | 0.71 | 0.680889 |
Target: 5'- --cGGCG-GCCGCgGGCGGGgG-CGCg -3' miRNA: 3'- aaaCUGCuCGGCGgCUGCCUgUaGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 23025 | 0.71 | 0.680889 |
Target: 5'- --cGGCGcgcuaccGCCGCCGGCaGGACGcCGCc -3' miRNA: 3'- aaaCUGCu------CGGCGGCUG-CCUGUaGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 60810 | 0.71 | 0.689969 |
Target: 5'- --gGGCGuaGGCCgagaacccgaacuGCCGGCGGGCGcgcUCGCa -3' miRNA: 3'- aaaCUGC--UCGG-------------CGGCUGCCUGU---AGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 39094 | 0.71 | 0.690976 |
Target: 5'- --cGGCacGGCCaCCGACGGccGCGUCGCg -3' miRNA: 3'- aaaCUGc-UCGGcGGCUGCC--UGUAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 51656 | 0.71 | 0.690976 |
Target: 5'- gUUGACGucGGCCggGCCG-CGGACcuguuuguGUCGCa -3' miRNA: 3'- aAACUGC--UCGG--CGGCuGCCUG--------UAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 93744 | 0.71 | 0.650424 |
Target: 5'- --aGACgGGGCCGCCG-CGGA-GUCGUu -3' miRNA: 3'- aaaCUG-CUCGGCGGCuGCCUgUAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 112752 | 0.71 | 0.690976 |
Target: 5'- --cGGCGGcGCCGCCGcgccCGGACucggCGCc -3' miRNA: 3'- aaaCUGCU-CGGCGGCu---GCCUGua--GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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