miRNA display CGI


Results 101 - 120 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 68178 0.71 0.680889
Target:  5'- --cGGCG-GCCGCgGGCGGGgG-CGCg -3'
miRNA:   3'- aaaCUGCuCGGCGgCUGCCUgUaGCG- -5'
21439 5' -56 NC_004812.1 + 137742 0.71 0.660604
Target:  5'- ---cGCGGGCCGCCGACccccgGGACc-CGCu -3'
miRNA:   3'- aaacUGCUCGGCGGCUG-----CCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 17050 0.71 0.660604
Target:  5'- --gGGCGccucggucccGGCCGCCG-CGGACG-CGCc -3'
miRNA:   3'- aaaCUGC----------UCGGCGGCuGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 2519 0.71 0.660604
Target:  5'- --cGGCGcGGCCGUCGagcGCGGGCAgcacggCGCg -3'
miRNA:   3'- aaaCUGC-UCGGCGGC---UGCCUGUa-----GCG- -5'
21439 5' -56 NC_004812.1 + 13140 0.71 0.660604
Target:  5'- --gGugGuGCCGCCGGCG-ACAgcgacgCGCg -3'
miRNA:   3'- aaaCugCuCGGCGGCUGCcUGUa-----GCG- -5'
21439 5' -56 NC_004812.1 + 117186 0.71 0.650424
Target:  5'- --cGGCGAGgCGCuCGACGGgacccGCGUCGg -3'
miRNA:   3'- aaaCUGCUCgGCG-GCUGCC-----UGUAGCg -5'
21439 5' -56 NC_004812.1 + 59250 0.71 0.640228
Target:  5'- --cGGCGAGCUGCuUGGCGG-CGgugCGCg -3'
miRNA:   3'- aaaCUGCUCGGCG-GCUGCCuGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 80496 0.71 0.669748
Target:  5'- --cGACGAgcucgagGCCGCCGccGCGGACcUgGCg -3'
miRNA:   3'- aaaCUGCU-------CGGCGGC--UGCCUGuAgCG- -5'
21439 5' -56 NC_004812.1 + 51656 0.71 0.690976
Target:  5'- gUUGACGucGGCCggGCCG-CGGACcuguuuguGUCGCa -3'
miRNA:   3'- aAACUGC--UCGG--CGGCuGCCUG--------UAGCG- -5'
21439 5' -56 NC_004812.1 + 127307 0.71 0.670762
Target:  5'- -gUGGCGcGCUGCCGgaagugucgcACGGccGCGUCGCu -3'
miRNA:   3'- aaACUGCuCGGCGGC----------UGCC--UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 23025 0.71 0.680889
Target:  5'- --cGGCGcgcuaccGCCGCCGGCaGGACGcCGCc -3'
miRNA:   3'- aaaCUGCu------CGGCGGCUG-CCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 60810 0.71 0.689969
Target:  5'- --gGGCGuaGGCCgagaacccgaacuGCCGGCGGGCGcgcUCGCa -3'
miRNA:   3'- aaaCUGC--UCGG-------------CGGCUGCCUGU---AGCG- -5'
21439 5' -56 NC_004812.1 + 39094 0.71 0.690976
Target:  5'- --cGGCacGGCCaCCGACGGccGCGUCGCg -3'
miRNA:   3'- aaaCUGc-UCGGcGGCUGCC--UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 112752 0.71 0.690976
Target:  5'- --cGGCGGcGCCGCCGcgccCGGACucggCGCc -3'
miRNA:   3'- aaaCUGCU-CGGCGGCu---GCCUGua--GCG- -5'
21439 5' -56 NC_004812.1 + 6124 0.7 0.750161
Target:  5'- --cGGCGGGCUGCCGgggaagGCGGGCGagGg -3'
miRNA:   3'- aaaCUGCUCGGCGGC------UGCCUGUagCg -5'
21439 5' -56 NC_004812.1 + 92765 0.7 0.701014
Target:  5'- ---cGCGGGCCGCCcGCGGcguucAUGUCGCu -3'
miRNA:   3'- aaacUGCUCGGCGGcUGCC-----UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 148966 0.7 0.750161
Target:  5'- ---aGCGGGUCGUCGGCGaGGCG-CGCg -3'
miRNA:   3'- aaacUGCUCGGCGGCUGC-CUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 108048 0.7 0.750161
Target:  5'- -gUGACGGcGCUGUucgCGACGGACGgcugCGUg -3'
miRNA:   3'- aaACUGCU-CGGCG---GCUGCCUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 104867 0.7 0.750161
Target:  5'- --cGGCG-GCCG-CGGCGGuCGUCGUc -3'
miRNA:   3'- aaaCUGCuCGGCgGCUGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 33764 0.7 0.744377
Target:  5'- ---uGCGGGCCcucacgggcucggcgGCCGACG-ACAUCGCc -3'
miRNA:   3'- aaacUGCUCGG---------------CGGCUGCcUGUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.