miRNA display CGI


Results 121 - 140 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 23623 0.7 0.740501
Target:  5'- -gUGGCcGGgCGCCcaGACGGGCGUcCGCg -3'
miRNA:   3'- aaACUGcUCgGCGG--CUGCCUGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 35641 0.7 0.740501
Target:  5'- gUUGACGuGCCGCgGgcgcgcGCGGGgGUCGg -3'
miRNA:   3'- aAACUGCuCGGCGgC------UGCCUgUAGCg -5'
21439 5' -56 NC_004812.1 + 86546 0.7 0.740501
Target:  5'- -aUGACGAGCacagauuccgaCG-CGGCGGuCGUCGCc -3'
miRNA:   3'- aaACUGCUCG-----------GCgGCUGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 119513 0.7 0.740501
Target:  5'- ---cGCGGGCCGCCGGgcgcccCGGGCcucCGCg -3'
miRNA:   3'- aaacUGCUCGGCGGCU------GCCUGua-GCG- -5'
21439 5' -56 NC_004812.1 + 33764 0.7 0.744377
Target:  5'- ---uGCGGGCCcucacgggcucggcgGCCGACG-ACAUCGCc -3'
miRNA:   3'- aaacUGCUCGG---------------CGGCUGCcUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 144619 0.7 0.750161
Target:  5'- --aGACcgGAGcCCGCCGGCGGAacccCGCc -3'
miRNA:   3'- aaaCUG--CUC-GGCGGCUGCCUgua-GCG- -5'
21439 5' -56 NC_004812.1 + 6124 0.7 0.750161
Target:  5'- --cGGCGGGCUGCCGgggaagGCGGGCGagGg -3'
miRNA:   3'- aaaCUGCUCGGCGGC------UGCCUGUagCg -5'
21439 5' -56 NC_004812.1 + 104867 0.7 0.750161
Target:  5'- --cGGCG-GCCG-CGGCGGuCGUCGUc -3'
miRNA:   3'- aaaCUGCuCGGCgGCUGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 108048 0.7 0.750161
Target:  5'- -gUGACGGcGCUGUucgCGACGGACGgcugCGUg -3'
miRNA:   3'- aaACUGCU-CGGCG---GCUGCCUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 112782 0.7 0.740501
Target:  5'- ---cGCGAGCCGCgCGGCGGcuccccCGUCGg -3'
miRNA:   3'- aaacUGCUCGGCG-GCUGCCu-----GUAGCg -5'
21439 5' -56 NC_004812.1 + 110397 0.7 0.740501
Target:  5'- gUUUGugGAgGCCGUCGGgGGuuACGUgCGCg -3'
miRNA:   3'- -AAACugCU-CGGCGGCUgCC--UGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 728 0.7 0.720909
Target:  5'- --cGGCGcGGUCGCCGGCGGGgGUgggggcggCGCg -3'
miRNA:   3'- aaaCUGC-UCGGCGGCUGCCUgUA--------GCG- -5'
21439 5' -56 NC_004812.1 + 6789 0.7 0.720909
Target:  5'- --gGGCGAGCCGUgccuCGGgGGGCG-CGCc -3'
miRNA:   3'- aaaCUGCUCGGCG----GCUgCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 151036 0.7 0.720909
Target:  5'- --cGACGGGCCGCCGcgaacgcCGGACccCGa -3'
miRNA:   3'- aaaCUGCUCGGCGGCu------GCCUGuaGCg -5'
21439 5' -56 NC_004812.1 + 456 0.7 0.720909
Target:  5'- --cGAgccCGGGCCGCCGGCGcGccuGCGUgCGCa -3'
miRNA:   3'- aaaCU---GCUCGGCGGCUGC-C---UGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 138816 0.7 0.720909
Target:  5'- cUUUGACGGGCCG--GAgGGACGcCGCu -3'
miRNA:   3'- -AAACUGCUCGGCggCUgCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 53793 0.7 0.730747
Target:  5'- --aGGCGcGCCGCCccGugGaGAgGUCGCg -3'
miRNA:   3'- aaaCUGCuCGGCGG--CugC-CUgUAGCG- -5'
21439 5' -56 NC_004812.1 + 140640 0.7 0.730747
Target:  5'- --aGACGcGCCGCCG-CGcGGCggCGCc -3'
miRNA:   3'- aaaCUGCuCGGCGGCuGC-CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 23542 0.7 0.740501
Target:  5'- --cGGCGccaucGCCGCCGcCGG-CAUCGUc -3'
miRNA:   3'- aaaCUGCu----CGGCGGCuGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 101248 0.7 0.740501
Target:  5'- --cGACGGGCCGCagcgccgucaGGCGGGCGaacugcCGCc -3'
miRNA:   3'- aaaCUGCUCGGCGg---------CUGCCUGUa-----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.