miRNA display CGI


Results 141 - 160 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 86546 0.7 0.740501
Target:  5'- -aUGACGAGCacagauuccgaCG-CGGCGGuCGUCGCc -3'
miRNA:   3'- aaACUGCUCG-----------GCgGCUGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 30524 0.7 0.701014
Target:  5'- --gGGCcggGGGCCGCgCcgcgggacgGGCGGGCGUCGCg -3'
miRNA:   3'- aaaCUG---CUCGGCG-G---------CUGCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 80888 0.7 0.701014
Target:  5'- --gGACacgGAGCCGCUGGCGcGGCugcugCGCa -3'
miRNA:   3'- aaaCUG---CUCGGCGGCUGC-CUGua---GCG- -5'
21439 5' -56 NC_004812.1 + 3922 0.7 0.701014
Target:  5'- --cGGCgGGGCCGCgCGGCGGcgGCAcggCGCg -3'
miRNA:   3'- aaaCUG-CUCGGCG-GCUGCC--UGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 25528 0.7 0.720909
Target:  5'- --cGACGGGCCGCCGcgaacgcCGGACccCGa -3'
miRNA:   3'- aaaCUGCUCGGCGGCu------GCCUGuaGCg -5'
21439 5' -56 NC_004812.1 + 48957 0.7 0.701014
Target:  5'- --cGGCGAGCC-UCGACGGGgcCGUCGa -3'
miRNA:   3'- aaaCUGCUCGGcGGCUGCCU--GUAGCg -5'
21439 5' -56 NC_004812.1 + 111694 0.7 0.701014
Target:  5'- --cGACGuGGCCGCUGgcgaucugggccACGGGCGagcUCGCg -3'
miRNA:   3'- aaaCUGC-UCGGCGGC------------UGCCUGU---AGCG- -5'
21439 5' -56 NC_004812.1 + 131002 0.7 0.701014
Target:  5'- --cGugGGGCgCGCCGACgacgagaaGGACGagGCg -3'
miRNA:   3'- aaaCugCUCG-GCGGCUG--------CCUGUagCG- -5'
21439 5' -56 NC_004812.1 + 122617 0.7 0.701014
Target:  5'- ----cCGAGCCGCCgGGCGG-C-UCGCa -3'
miRNA:   3'- aaacuGCUCGGCGG-CUGCCuGuAGCG- -5'
21439 5' -56 NC_004812.1 + 104867 0.7 0.750161
Target:  5'- --cGGCG-GCCG-CGGCGGuCGUCGUc -3'
miRNA:   3'- aaaCUGCuCGGCgGCUGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 101248 0.7 0.740501
Target:  5'- --cGACGGGCCGCagcgccgucaGGCGGGCGaacugcCGCc -3'
miRNA:   3'- aaaCUGCUCGGCGg---------CUGCCUGUa-----GCG- -5'
21439 5' -56 NC_004812.1 + 40087 0.7 0.710995
Target:  5'- --cGGCGGGCgGCgGGCGGcCGggcgCGCg -3'
miRNA:   3'- aaaCUGCUCGgCGgCUGCCuGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 119513 0.7 0.740501
Target:  5'- ---cGCGGGCCGCCGGgcgcccCGGGCcucCGCg -3'
miRNA:   3'- aaacUGCUCGGCGGCU------GCCUGua-GCG- -5'
21439 5' -56 NC_004812.1 + 33764 0.7 0.744377
Target:  5'- ---uGCGGGCCcucacgggcucggcgGCCGACG-ACAUCGCc -3'
miRNA:   3'- aaacUGCUCGG---------------CGGCUGCcUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 91032 0.7 0.750161
Target:  5'- --cGAC-AGCUGCCGGgagaGGACGUCGg -3'
miRNA:   3'- aaaCUGcUCGGCGGCUg---CCUGUAGCg -5'
21439 5' -56 NC_004812.1 + 144619 0.7 0.750161
Target:  5'- --aGACcgGAGcCCGCCGGCGGAacccCGCc -3'
miRNA:   3'- aaaCUG--CUC-GGCGGCUGCCUgua-GCG- -5'
21439 5' -56 NC_004812.1 + 6124 0.7 0.750161
Target:  5'- --cGGCGGGCUGCCGgggaagGCGGGCGagGg -3'
miRNA:   3'- aaaCUGCUCGGCGGC------UGCCUGUagCg -5'
21439 5' -56 NC_004812.1 + 108048 0.7 0.750161
Target:  5'- -gUGACGGcGCUGUucgCGACGGACGgcugCGUg -3'
miRNA:   3'- aaACUGCU-CGGCG---GCUGCCUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 148966 0.7 0.750161
Target:  5'- ---aGCGGGUCGUCGGCGaGGCG-CGCg -3'
miRNA:   3'- aaacUGCUCGGCGGCUGC-CUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 43319 0.7 0.710995
Target:  5'- ---uGCGuGCCGCCGAagggcUGGuGCAUCGCc -3'
miRNA:   3'- aaacUGCuCGGCGGCU-----GCC-UGUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.