miRNA display CGI


Results 41 - 60 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 99518 0.73 0.549088
Target:  5'- --cGGcCGcGUCGCCGACGGACGgcgaCGCg -3'
miRNA:   3'- aaaCU-GCuCGGCGGCUGCCUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 129116 0.73 0.553076
Target:  5'- --cGGCGAggagcucuugcgcuuGCgCGCCGGCGGGCG-CGCg -3'
miRNA:   3'- aaaCUGCU---------------CG-GCGGCUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 3608 0.73 0.553076
Target:  5'- --cGGCGAggagcucuugcgcuuGCgCGCCGGCGGGCG-CGCg -3'
miRNA:   3'- aaaCUGCU---------------CG-GCGGCUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 107087 0.73 0.559075
Target:  5'- --cGAUGAcCuCGCCGACGGGgGUCGUg -3'
miRNA:   3'- aaaCUGCUcG-GCGGCUGCCUgUAGCG- -5'
21439 5' -56 NC_004812.1 + 54498 0.73 0.559075
Target:  5'- --cGGCgGGGCCGgCGgcACGGGCAUCGUc -3'
miRNA:   3'- aaaCUG-CUCGGCgGC--UGCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 148905 0.73 0.559075
Target:  5'- --gGGCGAGCgucCGgCGACGGGCGUCcgGCg -3'
miRNA:   3'- aaaCUGCUCG---GCgGCUGCCUGUAG--CG- -5'
21439 5' -56 NC_004812.1 + 81086 0.73 0.559075
Target:  5'- --cGACGcGCUGCgGGCGGACGU-GCa -3'
miRNA:   3'- aaaCUGCuCGGCGgCUGCCUGUAgCG- -5'
21439 5' -56 NC_004812.1 + 23397 0.73 0.559075
Target:  5'- --gGGCGAGCgucCGgCGACGGGCGUCcgGCg -3'
miRNA:   3'- aaaCUGCUCG---GCgGCUGCCUGUAG--CG- -5'
21439 5' -56 NC_004812.1 + 150666 0.73 0.566096
Target:  5'- --gGGCgGAGCCGCCGGucgcccccgcgcucCGGGCggcGUCGCg -3'
miRNA:   3'- aaaCUG-CUCGGCGGCU--------------GCCUG---UAGCG- -5'
21439 5' -56 NC_004812.1 + 55621 0.73 0.569112
Target:  5'- --aGGCGguccgcguacAGCCGCCGgcgcucGCGGACGUcCGCg -3'
miRNA:   3'- aaaCUGC----------UCGGCGGC------UGCCUGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 59892 0.73 0.569112
Target:  5'- --cGGCGAGCCcuaucGCCGccGCGGACccCGCg -3'
miRNA:   3'- aaaCUGCUCGG-----CGGC--UGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 1994 0.73 0.569112
Target:  5'- -gUGGCGGGucCCGCCGGCGG---UCGCu -3'
miRNA:   3'- aaACUGCUC--GGCGGCUGCCuguAGCG- -5'
21439 5' -56 NC_004812.1 + 101337 0.73 0.569112
Target:  5'- --aGGCGcucGCCGCagaGGCGGGCGuUCGCg -3'
miRNA:   3'- aaaCUGCu--CGGCGg--CUGCCUGU-AGCG- -5'
21439 5' -56 NC_004812.1 + 21750 0.73 0.569112
Target:  5'- --gGGCGucuGCCGCCGACGcGcCGUCGg -3'
miRNA:   3'- aaaCUGCu--CGGCGGCUGC-CuGUAGCg -5'
21439 5' -56 NC_004812.1 + 51396 0.73 0.579194
Target:  5'- --aGGCGccGGCCGCCGGCGcGC-UCGCc -3'
miRNA:   3'- aaaCUGC--UCGGCGGCUGCcUGuAGCG- -5'
21439 5' -56 NC_004812.1 + 96784 0.73 0.579194
Target:  5'- --cGGCGgguucgcaccGGCCGCUGGCGGGCGaacccgCGCg -3'
miRNA:   3'- aaaCUGC----------UCGGCGGCUGCCUGUa-----GCG- -5'
21439 5' -56 NC_004812.1 + 107428 0.73 0.579194
Target:  5'- --aGGCccaccGGCCGCgCGGCGGcCGUCGCg -3'
miRNA:   3'- aaaCUGc----UCGGCG-GCUGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 138960 0.73 0.579194
Target:  5'- --gGGCGAGCCGCCGGCGaccgaagccccGGCAcCGa -3'
miRNA:   3'- aaaCUGCUCGGCGGCUGC-----------CUGUaGCg -5'
21439 5' -56 NC_004812.1 + 16136 0.73 0.579194
Target:  5'- --cGACGcAGCUGCgCGACcgGGACAUCGa -3'
miRNA:   3'- aaaCUGC-UCGGCG-GCUG--CCUGUAGCg -5'
21439 5' -56 NC_004812.1 + 122728 0.73 0.579194
Target:  5'- -gUGACGGGCCgGCCcaugcgGGCGGGCGggagagggCGCg -3'
miRNA:   3'- aaACUGCUCGG-CGG------CUGCCUGUa-------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.