Results 81 - 100 of 515 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21439 | 5' | -56 | NC_004812.1 | + | 153629 | 0.72 | 0.619827 |
Target: 5'- -gUGACGGGCCgGCCcaugcgGGCGGGCGgggagagggCGCg -3' miRNA: 3'- aaACUGCUCGG-CGG------CUGCCUGUa--------GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 579 | 0.72 | 0.619827 |
Target: 5'- --cGugGAGCCGCgGGCGcGGCuccgguagCGCg -3' miRNA: 3'- aaaCugCUCGGCGgCUGC-CUGua------GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 73144 | 0.72 | 0.619827 |
Target: 5'- --cGGCGcGCCGCCG-CGGACcagcaCGCg -3' miRNA: 3'- aaaCUGCuCGGCGGCuGCCUGua---GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 11986 | 0.72 | 0.619827 |
Target: 5'- --gGGCGGGguuCCGCCGGCGGGCuccggucucCGCg -3' miRNA: 3'- aaaCUGCUC---GGCGGCUGCCUGua-------GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 31480 | 0.72 | 0.619827 |
Target: 5'- --cGugGAGCCGCgGGCGcGGCuccgguagCGCg -3' miRNA: 3'- aaaCugCUCGGCGgCUGC-CUGua------GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 79459 | 0.72 | 0.619827 |
Target: 5'- --gGGCGGGCUGCCGGcCGaGACGcggCGCc -3' miRNA: 3'- aaaCUGCUCGGCGGCU-GC-CUGUa--GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 60918 | 0.72 | 0.630027 |
Target: 5'- --cGACGGGCUGaaGugGGACggCGUg -3' miRNA: 3'- aaaCUGCUCGGCggCugCCUGuaGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 148250 | 0.72 | 0.630027 |
Target: 5'- --cGGCG-GCCGCCGACgcggugGGGCGgccgCGCc -3' miRNA: 3'- aaaCUGCuCGGCGGCUG------CCUGUa---GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 117349 | 0.72 | 0.630027 |
Target: 5'- --cGGCG-GCCGCCGACGcgguggggcGGCcgCGCc -3' miRNA: 3'- aaaCUGCuCGGCGGCUGC---------CUGuaGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 123606 | 0.72 | 0.630027 |
Target: 5'- --gGGCGGGCgGgCGGCGGAgGUcCGCu -3' miRNA: 3'- aaaCUGCUCGgCgGCUGCCUgUA-GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 154507 | 0.72 | 0.630027 |
Target: 5'- --gGGCGGGCgGgCGGCGGAgGUcCGCu -3' miRNA: 3'- aaaCUGCUCGgCgGCUGCCUgUA-GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 59250 | 0.71 | 0.640228 |
Target: 5'- --cGGCGAGCUGCuUGGCGG-CGgugCGCg -3' miRNA: 3'- aaaCUGCUCGGCG-GCUGCCuGUa--GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 93744 | 0.71 | 0.650424 |
Target: 5'- --aGACgGGGCCGCCG-CGGA-GUCGUu -3' miRNA: 3'- aaaCUG-CUCGGCGGCuGCCUgUAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 82090 | 0.71 | 0.650424 |
Target: 5'- --gGGCGcguGGCCcggcugGCCGGCGGACAgcagCGCc -3' miRNA: 3'- aaaCUGC---UCGG------CGGCUGCCUGUa---GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 72842 | 0.71 | 0.650424 |
Target: 5'- ---cGCGAGCgGCCGccggcgaucagcGCGGACAgCGCg -3' miRNA: 3'- aaacUGCUCGgCGGC------------UGCCUGUaGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 117186 | 0.71 | 0.650424 |
Target: 5'- --cGGCGAGgCGCuCGACGGgacccGCGUCGg -3' miRNA: 3'- aaaCUGCUCgGCG-GCUGCC-----UGUAGCg -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 66778 | 0.71 | 0.660604 |
Target: 5'- -gUGGCGAG-CGCCGugGGuCGggGCa -3' miRNA: 3'- aaACUGCUCgGCGGCugCCuGUagCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 113454 | 0.71 | 0.660604 |
Target: 5'- ----cCGGGCCGCCG-CGG-UGUCGCg -3' miRNA: 3'- aaacuGCUCGGCGGCuGCCuGUAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 116499 | 0.71 | 0.660604 |
Target: 5'- --gGGCcggGGGUCGCgGACGGACG-CGCg -3' miRNA: 3'- aaaCUG---CUCGGCGgCUGCCUGUaGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 128027 | 0.71 | 0.660604 |
Target: 5'- --cGGCGcGGCCGUCGagcGCGGGCAgcacggCGCg -3' miRNA: 3'- aaaCUGC-UCGGCGGC---UGCCUGUa-----GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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