Results 101 - 120 of 515 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21439 | 5' | -56 | NC_004812.1 | + | 2519 | 0.71 | 0.660604 |
Target: 5'- --cGGCGcGGCCGUCGagcGCGGGCAgcacggCGCg -3' miRNA: 3'- aaaCUGC-UCGGCGGC---UGCCUGUa-----GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 113454 | 0.71 | 0.660604 |
Target: 5'- ----cCGGGCCGCCG-CGG-UGUCGCg -3' miRNA: 3'- aaacuGCUCGGCGGCuGCCuGUAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 66778 | 0.71 | 0.660604 |
Target: 5'- -gUGGCGAG-CGCCGugGGuCGggGCa -3' miRNA: 3'- aaACUGCUCgGCGGCugCCuGUagCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 137742 | 0.71 | 0.660604 |
Target: 5'- ---cGCGGGCCGCCGACccccgGGACc-CGCu -3' miRNA: 3'- aaacUGCUCGGCGGCUG-----CCUGuaGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 80496 | 0.71 | 0.669748 |
Target: 5'- --cGACGAgcucgagGCCGCCGccGCGGACcUgGCg -3' miRNA: 3'- aaaCUGCU-------CGGCGGC--UGCCUGuAgCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 127307 | 0.71 | 0.670762 |
Target: 5'- -gUGGCGcGCUGCCGgaagugucgcACGGccGCGUCGCu -3' miRNA: 3'- aaACUGCuCGGCGGC----------UGCC--UGUAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 54433 | 0.71 | 0.670762 |
Target: 5'- -gUGGCGccGGUCGgCGGCGGGCAgacguagaaggUCGCg -3' miRNA: 3'- aaACUGC--UCGGCgGCUGCCUGU-----------AGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 48346 | 0.71 | 0.670762 |
Target: 5'- --cGGCGGacGCCGCCGagggcuccgccGCGGACGcCGCc -3' miRNA: 3'- aaaCUGCU--CGGCGGC-----------UGCCUGUaGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 23025 | 0.71 | 0.680889 |
Target: 5'- --cGGCGcgcuaccGCCGCCGGCaGGACGcCGCc -3' miRNA: 3'- aaaCUGCu------CGGCGGCUG-CCUGUaGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 68178 | 0.71 | 0.680889 |
Target: 5'- --cGGCG-GCCGCgGGCGGGgG-CGCg -3' miRNA: 3'- aaaCUGCuCGGCGgCUGCCUgUaGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 60810 | 0.71 | 0.689969 |
Target: 5'- --gGGCGuaGGCCgagaacccgaacuGCCGGCGGGCGcgcUCGCa -3' miRNA: 3'- aaaCUGC--UCGG-------------CGGCUGCCUGU---AGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 51656 | 0.71 | 0.690976 |
Target: 5'- gUUGACGucGGCCggGCCG-CGGACcuguuuguGUCGCa -3' miRNA: 3'- aAACUGC--UCGG--CGGCuGCCUG--------UAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 112752 | 0.71 | 0.690976 |
Target: 5'- --cGGCGGcGCCGCCGcgccCGGACucggCGCc -3' miRNA: 3'- aaaCUGCU-CGGCGGCu---GCCUGua--GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 39094 | 0.71 | 0.690976 |
Target: 5'- --cGGCacGGCCaCCGACGGccGCGUCGCg -3' miRNA: 3'- aaaCUGc-UCGGcGGCUGCC--UGUAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 92765 | 0.7 | 0.701014 |
Target: 5'- ---cGCGGGCCGCCcGCGGcguucAUGUCGCu -3' miRNA: 3'- aaacUGCUCGGCGGcUGCC-----UGUAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 104996 | 0.7 | 0.701014 |
Target: 5'- ---cGCGGGCCGCCG-CGG-CGccccUCGCg -3' miRNA: 3'- aaacUGCUCGGCGGCuGCCuGU----AGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 156032 | 0.7 | 0.701014 |
Target: 5'- --gGGCcggGGGCCGCgCcgcgggacgGGCGGGCGUCGCg -3' miRNA: 3'- aaaCUG---CUCGGCG-G---------CUGCCUGUAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 80888 | 0.7 | 0.701014 |
Target: 5'- --gGACacgGAGCCGCUGGCGcGGCugcugCGCa -3' miRNA: 3'- aaaCUG---CUCGGCGGCUGC-CUGua---GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 30524 | 0.7 | 0.701014 |
Target: 5'- --gGGCcggGGGCCGCgCcgcgggacgGGCGGGCGUCGCg -3' miRNA: 3'- aaaCUG---CUCGGCG-G---------CUGCCUGUAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 129430 | 0.7 | 0.701014 |
Target: 5'- --cGGCgGGGCCGCgCGGCGGcgGCAcggCGCg -3' miRNA: 3'- aaaCUG-CUCGGCG-GCUGCC--UGUa--GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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