miRNA display CGI


Results 121 - 140 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 80888 0.7 0.701014
Target:  5'- --gGACacgGAGCCGCUGGCGcGGCugcugCGCa -3'
miRNA:   3'- aaaCUG---CUCGGCGGCUGC-CUGua---GCG- -5'
21439 5' -56 NC_004812.1 + 131002 0.7 0.701014
Target:  5'- --cGugGGGCgCGCCGACgacgagaaGGACGagGCg -3'
miRNA:   3'- aaaCugCUCG-GCGGCUG--------CCUGUagCG- -5'
21439 5' -56 NC_004812.1 + 122617 0.7 0.701014
Target:  5'- ----cCGAGCCGCCgGGCGG-C-UCGCa -3'
miRNA:   3'- aaacuGCUCGGCGG-CUGCCuGuAGCG- -5'
21439 5' -56 NC_004812.1 + 111694 0.7 0.701014
Target:  5'- --cGACGuGGCCGCUGgcgaucugggccACGGGCGagcUCGCg -3'
miRNA:   3'- aaaCUGC-UCGGCGGC------------UGCCUGU---AGCG- -5'
21439 5' -56 NC_004812.1 + 48957 0.7 0.701014
Target:  5'- --cGGCGAGCC-UCGACGGGgcCGUCGa -3'
miRNA:   3'- aaaCUGCUCGGcGGCUGCCU--GUAGCg -5'
21439 5' -56 NC_004812.1 + 104696 0.7 0.710995
Target:  5'- --aGcUGGGCCGCCGccauGCGGGCGUgCGUg -3'
miRNA:   3'- aaaCuGCUCGGCGGC----UGCCUGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 46292 0.7 0.710995
Target:  5'- --gGGCGgccggaGGCCG-CGGCGGGCcgCGCg -3'
miRNA:   3'- aaaCUGC------UCGGCgGCUGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 43319 0.7 0.710995
Target:  5'- ---uGCGuGCCGCCGAagggcUGGuGCAUCGCc -3'
miRNA:   3'- aaacUGCuCGGCGGCU-----GCC-UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 40087 0.7 0.710995
Target:  5'- --cGGCGGGCgGCgGGCGGcCGggcgCGCg -3'
miRNA:   3'- aaaCUGCUCGgCGgCUGCCuGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 37460 0.7 0.710995
Target:  5'- ---cGCGAGUCGCuuaggcaagaaCGGCGGGCGUCuGCg -3'
miRNA:   3'- aaacUGCUCGGCG-----------GCUGCCUGUAG-CG- -5'
21439 5' -56 NC_004812.1 + 25199 0.7 0.710995
Target:  5'- --cGGCGGcuccGcCCGCCGGCGGACGggGUa -3'
miRNA:   3'- aaaCUGCU----C-GGCGGCUGCCUGUagCG- -5'
21439 5' -56 NC_004812.1 + 127504 0.7 0.710995
Target:  5'- --gGGCGGGucCCGCCGGCGG---UCGCu -3'
miRNA:   3'- aaaCUGCUC--GGCGGCUGCCuguAGCG- -5'
21439 5' -56 NC_004812.1 + 150707 0.7 0.710995
Target:  5'- --cGGCGGcuccGcCCGCCGGCGGACGggGUa -3'
miRNA:   3'- aaaCUGCU----C-GGCGGCUGCCUGUagCG- -5'
21439 5' -56 NC_004812.1 + 6559 0.7 0.710995
Target:  5'- ---cGCGAGUCGCuuaggcaagaaCGGCGGGCGUCuGCg -3'
miRNA:   3'- aaacUGCUCGGCG-----------GCUGCCUGUAG-CG- -5'
21439 5' -56 NC_004812.1 + 107757 0.7 0.719921
Target:  5'- cUUGACGAGgCGCCucgucucgucgagGACuccaGGGCGUCGUc -3'
miRNA:   3'- aAACUGCUCgGCGG-------------CUG----CCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 130153 0.7 0.720909
Target:  5'- ---cGCGGGCgCGCCGGCGG-CcUCGUa -3'
miRNA:   3'- aaacUGCUCG-GCGGCUGCCuGuAGCG- -5'
21439 5' -56 NC_004812.1 + 6789 0.7 0.720909
Target:  5'- --gGGCGAGCCGUgccuCGGgGGGCG-CGCc -3'
miRNA:   3'- aaaCUGCUCGGCG----GCUgCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 138816 0.7 0.720909
Target:  5'- cUUUGACGGGCCG--GAgGGACGcCGCu -3'
miRNA:   3'- -AAACUGCUCGGCggCUgCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 151036 0.7 0.720909
Target:  5'- --cGACGGGCCGCCGcgaacgcCGGACccCGa -3'
miRNA:   3'- aaaCUGCUCGGCGGCu------GCCUGuaGCg -5'
21439 5' -56 NC_004812.1 + 456 0.7 0.720909
Target:  5'- --cGAgccCGGGCCGCCGGCGcGccuGCGUgCGCa -3'
miRNA:   3'- aaaCU---GCUCGGCGGCUGC-C---UGUA-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.