Results 141 - 160 of 515 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21439 | 5' | -56 | NC_004812.1 | + | 137946 | 0.7 | 0.720909 |
Target: 5'- --cGGCGGG-CGCCG-UGGACAUgGCc -3' miRNA: 3'- aaaCUGCUCgGCGGCuGCCUGUAgCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 31357 | 0.7 | 0.720909 |
Target: 5'- --cGAgccCGGGCCGCCGGCGcGccuGCGUgCGCa -3' miRNA: 3'- aaaCU---GCUCGGCGGCUGC-C---UGUA-GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 107216 | 0.7 | 0.720909 |
Target: 5'- ---cGCGGGCCGCC--UGGGCGUCGa -3' miRNA: 3'- aaacUGCUCGGCGGcuGCCUGUAGCg -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 59505 | 0.7 | 0.720909 |
Target: 5'- --cGGCGcGGCCcCCGGCGGACAggggGCg -3' miRNA: 3'- aaaCUGC-UCGGcGGCUGCCUGUag--CG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 151036 | 0.7 | 0.720909 |
Target: 5'- --cGACGGGCCGCCGcgaacgcCGGACccCGa -3' miRNA: 3'- aaaCUGCUCGGCGGCu------GCCUGuaGCg -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 25528 | 0.7 | 0.720909 |
Target: 5'- --cGACGGGCCGCCGcgaacgcCGGACccCGa -3' miRNA: 3'- aaaCUGCUCGGCGGCu------GCCUGuaGCg -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 138816 | 0.7 | 0.720909 |
Target: 5'- cUUUGACGGGCCG--GAgGGACGcCGCu -3' miRNA: 3'- -AAACUGCUCGGCggCUgCCUGUaGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 130153 | 0.7 | 0.720909 |
Target: 5'- ---cGCGGGCgCGCCGGCGG-CcUCGUa -3' miRNA: 3'- aaacUGCUCG-GCGGCUGCCuGuAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 456 | 0.7 | 0.720909 |
Target: 5'- --cGAgccCGGGCCGCCGGCGcGccuGCGUgCGCa -3' miRNA: 3'- aaaCU---GCUCGGCGGCUGC-C---UGUA-GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 4645 | 0.7 | 0.720909 |
Target: 5'- ---cGCGGGCgCGCCGGCGG-CcUCGUa -3' miRNA: 3'- aaacUGCUCG-GCGGCUGCCuGuAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 140640 | 0.7 | 0.730747 |
Target: 5'- --aGACGcGCCGCCG-CGcGGCggCGCc -3' miRNA: 3'- aaaCUGCuCGGCGGCuGC-CUGuaGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 53793 | 0.7 | 0.730747 |
Target: 5'- --aGGCGcGCCGCCccGugGaGAgGUCGCg -3' miRNA: 3'- aaaCUGCuCGGCGG--CugC-CUgUAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 79520 | 0.7 | 0.730747 |
Target: 5'- -aUGGCG-GCCGCCaagcucACGGACgagcuGUCGCc -3' miRNA: 3'- aaACUGCuCGGCGGc-----UGCCUG-----UAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 119513 | 0.7 | 0.740501 |
Target: 5'- ---cGCGGGCCGCCGGgcgcccCGGGCcucCGCg -3' miRNA: 3'- aaacUGCUCGGCGGCU------GCCUGua-GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 101248 | 0.7 | 0.740501 |
Target: 5'- --cGACGGGCCGCagcgccgucaGGCGGGCGaacugcCGCc -3' miRNA: 3'- aaaCUGCUCGGCGg---------CUGCCUGUa-----GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 35641 | 0.7 | 0.740501 |
Target: 5'- gUUGACGuGCCGCgGgcgcgcGCGGGgGUCGg -3' miRNA: 3'- aAACUGCuCGGCGgC------UGCCUgUAGCg -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 86546 | 0.7 | 0.740501 |
Target: 5'- -aUGACGAGCacagauuccgaCG-CGGCGGuCGUCGCc -3' miRNA: 3'- aaACUGCUCG-----------GCgGCUGCCuGUAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 23623 | 0.7 | 0.740501 |
Target: 5'- -gUGGCcGGgCGCCcaGACGGGCGUcCGCg -3' miRNA: 3'- aaACUGcUCgGCGG--CUGCCUGUA-GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 110397 | 0.7 | 0.740501 |
Target: 5'- gUUUGugGAgGCCGUCGGgGGuuACGUgCGCg -3' miRNA: 3'- -AAACugCU-CGGCGGCUgCC--UGUA-GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 23542 | 0.7 | 0.740501 |
Target: 5'- --cGGCGccaucGCCGCCGcCGG-CAUCGUc -3' miRNA: 3'- aaaCUGCu----CGGCGGCuGCCuGUAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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