Results 161 - 180 of 515 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21439 | 5' | -56 | NC_004812.1 | + | 86546 | 0.7 | 0.740501 |
Target: 5'- -aUGACGAGCacagauuccgaCG-CGGCGGuCGUCGCc -3' miRNA: 3'- aaACUGCUCG-----------GCgGCUGCCuGUAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 119513 | 0.7 | 0.740501 |
Target: 5'- ---cGCGGGCCGCCGGgcgcccCGGGCcucCGCg -3' miRNA: 3'- aaacUGCUCGGCGGCU------GCCUGua-GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 107149 | 0.7 | 0.740501 |
Target: 5'- --aGGCGAaccagcGCCGCCuGGCGGGCAcCGg -3' miRNA: 3'- aaaCUGCU------CGGCGG-CUGCCUGUaGCg -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 150414 | 0.7 | 0.740501 |
Target: 5'- ---cGCGGGCCGCCGGgcgcccCGGGCcucCGCg -3' miRNA: 3'- aaacUGCUCGGCGGCU------GCCUGua-GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 88207 | 0.7 | 0.740501 |
Target: 5'- --gGGCGAGCCGCgGcccCGGACggCGg -3' miRNA: 3'- aaaCUGCUCGGCGgCu--GCCUGuaGCg -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 117715 | 0.7 | 0.740501 |
Target: 5'- -gUGAUGGGCaagGCCGuGCGGAgccucgacgaCGUCGCg -3' miRNA: 3'- aaACUGCUCGg--CGGC-UGCCU----------GUAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 33764 | 0.7 | 0.744377 |
Target: 5'- ---uGCGGGCCcucacgggcucggcgGCCGACG-ACAUCGCc -3' miRNA: 3'- aaacUGCUCGG---------------CGGCUGCcUGUAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 108048 | 0.7 | 0.750161 |
Target: 5'- -gUGACGGcGCUGUucgCGACGGACGgcugCGUg -3' miRNA: 3'- aaACUGCU-CGGCG---GCUGCCUGUa---GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 49168 | 0.7 | 0.750161 |
Target: 5'- --cGGCGAGuCCG-CGACGGccGCcgCGCg -3' miRNA: 3'- aaaCUGCUC-GGCgGCUGCC--UGuaGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 91032 | 0.7 | 0.750161 |
Target: 5'- --cGAC-AGCUGCCGGgagaGGACGUCGg -3' miRNA: 3'- aaaCUGcUCGGCGGCUg---CCUGUAGCg -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 17481 | 0.7 | 0.750161 |
Target: 5'- --cGGCGGauGCCGCgGuggcgcuccCGGACGUCGCc -3' miRNA: 3'- aaaCUGCU--CGGCGgCu--------GCCUGUAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 101720 | 0.7 | 0.750161 |
Target: 5'- ---uGCGAGCCGgaCGGCGG-CAUCGg -3' miRNA: 3'- aaacUGCUCGGCg-GCUGCCuGUAGCg -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 148966 | 0.7 | 0.750161 |
Target: 5'- ---aGCGGGUCGUCGGCGaGGCG-CGCg -3' miRNA: 3'- aaacUGCUCGGCGGCUGC-CUGUaGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 6124 | 0.7 | 0.750161 |
Target: 5'- --cGGCGGGCUGCCGgggaagGCGGGCGagGg -3' miRNA: 3'- aaaCUGCUCGGCGGC------UGCCUGUagCg -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 28927 | 0.7 | 0.750161 |
Target: 5'- --cGACGAcGCCGCCGcCuGGAgGUgGCc -3' miRNA: 3'- aaaCUGCU-CGGCGGCuG-CCUgUAgCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 144619 | 0.7 | 0.750161 |
Target: 5'- --aGACcgGAGcCCGCCGGCGGAacccCGCc -3' miRNA: 3'- aaaCUG--CUC-GGCGGCUGCCUgua-GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 87053 | 0.7 | 0.750161 |
Target: 5'- --cGGCGcGGCCGgCGccGCGGGCAggggCGCg -3' miRNA: 3'- aaaCUGC-UCGGCgGC--UGCCUGUa---GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 37025 | 0.7 | 0.750161 |
Target: 5'- --cGGCGGGCUGCCGgggaagGCGGGCGagGg -3' miRNA: 3'- aaaCUGCUCGGCGGC------UGCCUGUagCg -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 23458 | 0.7 | 0.750161 |
Target: 5'- ---aGCGGGUCGUCGGCGaGGCG-CGCg -3' miRNA: 3'- aaacUGCUCGGCGGCUGC-CUGUaGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 104867 | 0.7 | 0.750161 |
Target: 5'- --cGGCG-GCCG-CGGCGGuCGUCGUc -3' miRNA: 3'- aaaCUGCuCGGCgGCUGCCuGUAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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