miRNA display CGI


Results 181 - 200 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 48599 0.67 0.863164
Target:  5'- --cGACGcGGCCGCgGccaucCGGACGaCGCg -3'
miRNA:   3'- aaaCUGC-UCGGCGgCu----GCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 133064 0.67 0.863164
Target:  5'- --cGACGAuGCCGgCGGCGG-CGauggCGCc -3'
miRNA:   3'- aaaCUGCU-CGGCgGCUGCCuGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 41960 0.67 0.863164
Target:  5'- -gUGGCGGGCCGCacCGACGuccuCAUCa- -3'
miRNA:   3'- aaACUGCUCGGCG--GCUGCcu--GUAGcg -5'
21439 5' -56 NC_004812.1 + 81987 0.67 0.855514
Target:  5'- --gGGCGggGGCCGUCGAggagcUGGGCGUgGCc -3'
miRNA:   3'- aaaCUGC--UCGGCGGCU-----GCCUGUAgCG- -5'
21439 5' -56 NC_004812.1 + 127910 0.67 0.855514
Target:  5'- --aGACGGGCCGCagCGGCGcGGCcagcccccagCGCg -3'
miRNA:   3'- aaaCUGCUCGGCG--GCUGC-CUGua--------GCG- -5'
21439 5' -56 NC_004812.1 + 94143 0.67 0.855514
Target:  5'- --gGACGcaGGCCGCCGcGCuGGGguUCGUg -3'
miRNA:   3'- aaaCUGC--UCGGCGGC-UG-CCUguAGCG- -5'
21439 5' -56 NC_004812.1 + 79892 0.67 0.855514
Target:  5'- --cGGCGAaaaaGUCGUgGGCgGGGCAUUGCg -3'
miRNA:   3'- aaaCUGCU----CGGCGgCUG-CCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 59311 0.67 0.855514
Target:  5'- ---cGCGAGCUcgugGUCGACGGGgGUCGg -3'
miRNA:   3'- aaacUGCUCGG----CGGCUGCCUgUAGCg -5'
21439 5' -56 NC_004812.1 + 33452 0.67 0.855514
Target:  5'- --cGACGAcGCCGCCGcCGu-CGUCGa -3'
miRNA:   3'- aaaCUGCU-CGGCGGCuGCcuGUAGCg -5'
21439 5' -56 NC_004812.1 + 105671 0.67 0.855514
Target:  5'- --gGACGGGCgGCCG-CGGAguUC-Cg -3'
miRNA:   3'- aaaCUGCUCGgCGGCuGCCUguAGcG- -5'
21439 5' -56 NC_004812.1 + 31598 0.67 0.855514
Target:  5'- --gGACGGGCCGCgCGcCGcGCAggggCGCc -3'
miRNA:   3'- aaaCUGCUCGGCG-GCuGCcUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 28933 0.67 0.855514
Target:  5'- ---cGCGGaauGCCGCCcGgGGACGUCGUg -3'
miRNA:   3'- aaacUGCU---CGGCGGcUgCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 2551 0.67 0.855514
Target:  5'- --cGACGAcGCCGCCGcCGu-CGUCGa -3'
miRNA:   3'- aaaCUGCU-CGGCGGCuGCcuGUAGCg -5'
21439 5' -56 NC_004812.1 + 2402 0.67 0.855514
Target:  5'- --aGACGGGCCGCagCGGCGcGGCcagcccccagCGCg -3'
miRNA:   3'- aaaCUGCUCGGCG--GCUGC-CUGua--------GCG- -5'
21439 5' -56 NC_004812.1 + 105155 0.67 0.855514
Target:  5'- --cGAgGGGgaCGuuGGCGGGgGUCGCg -3'
miRNA:   3'- aaaCUgCUCg-GCggCUGCCUgUAGCG- -5'
21439 5' -56 NC_004812.1 + 60265 0.67 0.855514
Target:  5'- --cGuCGGGgCGCCGGUGGcguuGCGUCGCg -3'
miRNA:   3'- aaaCuGCUCgGCGGCUGCC----UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 147546 0.67 0.854737
Target:  5'- --gGACGGGCggcggguuccgggUGCCGGCGcGGCcgCGUa -3'
miRNA:   3'- aaaCUGCUCG-------------GCGGCUGC-CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 135523 0.67 0.854737
Target:  5'- --cGGCGucuucgccgccucGGCCGCCG-CGGAC-UCGg -3'
miRNA:   3'- aaaCUGC-------------UCGGCGGCuGCCUGuAGCg -5'
21439 5' -56 NC_004812.1 + 22815 0.68 0.847663
Target:  5'- --cGAgGGGCUGaauCCGACGGACucggcGUCGUu -3'
miRNA:   3'- aaaCUgCUCGGC---GGCUGCCUG-----UAGCG- -5'
21439 5' -56 NC_004812.1 + 25093 0.68 0.847663
Target:  5'- --gGGCGGcGCCGCCGcGCGccGACG-CGCg -3'
miRNA:   3'- aaaCUGCU-CGGCGGC-UGC--CUGUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.