miRNA display CGI


Results 61 - 80 of 515 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 116438 0.66 0.910642
Target:  5'- --gGACG-GCCuGCgGgGCGGcCGUCGCg -3'
miRNA:   3'- aaaCUGCuCGG-CGgC-UGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 4047 0.66 0.910642
Target:  5'- --cGGCG-GCgGCCG-CGG-CGUCGUc -3'
miRNA:   3'- aaaCUGCuCGgCGGCuGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 27751 0.66 0.910042
Target:  5'- ---aGCGGGCCGCCcgcggcccgcaggGGCGGGCGgcccaGCc -3'
miRNA:   3'- aaacUGCUCGGCGG-------------CUGCCUGUag---CG- -5'
21439 5' -56 NC_004812.1 + 51097 0.66 0.910042
Target:  5'- -aUGACG-GCCgcacacccacucgGCCGcCGGGCccgGUCGCc -3'
miRNA:   3'- aaACUGCuCGG-------------CGGCuGCCUG---UAGCG- -5'
21439 5' -56 NC_004812.1 + 136545 0.66 0.90454
Target:  5'- -cUGGCu-GCCGCCGA-GGACc-CGCg -3'
miRNA:   3'- aaACUGcuCGGCGGCUgCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 138662 0.66 0.90454
Target:  5'- -cUGACGGGCC--UGugGGGCGagggguguggguUCGCg -3'
miRNA:   3'- aaACUGCUCGGcgGCugCCUGU------------AGCG- -5'
21439 5' -56 NC_004812.1 + 105872 0.66 0.90454
Target:  5'- --cGGCGGGUCGUgGGCGcGCGgugCGCu -3'
miRNA:   3'- aaaCUGCUCGGCGgCUGCcUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 108185 0.66 0.90454
Target:  5'- aUUGGCGucguaCCGCagCGGCGGGuCGUUGCg -3'
miRNA:   3'- aAACUGCuc---GGCG--GCUGCCU-GUAGCG- -5'
21439 5' -56 NC_004812.1 + 101168 0.66 0.90454
Target:  5'- -cUGACG-GCCGCgGcGgGGACgGUCGUg -3'
miRNA:   3'- aaACUGCuCGGCGgC-UgCCUG-UAGCG- -5'
21439 5' -56 NC_004812.1 + 69804 0.66 0.90454
Target:  5'- --gGACGGGaaaCGUCGACGGGgGccgaggggguUCGCc -3'
miRNA:   3'- aaaCUGCUCg--GCGGCUGCCUgU----------AGCG- -5'
21439 5' -56 NC_004812.1 + 5660 0.66 0.90454
Target:  5'- ---cGCGu-CCGCCGGgGGGCGUCGg -3'
miRNA:   3'- aaacUGCucGGCGGCUgCCUGUAGCg -5'
21439 5' -56 NC_004812.1 + 196 0.66 0.90454
Target:  5'- ---cGCGcGCCGCCGGgggaGGGCccggGUCGCg -3'
miRNA:   3'- aaacUGCuCGGCGGCUg---CCUG----UAGCG- -5'
21439 5' -56 NC_004812.1 + 131168 0.66 0.90454
Target:  5'- ---cGCGu-CCGCCGGgGGGCGUCGg -3'
miRNA:   3'- aaacUGCucGGCGGCUgCCUGUAGCg -5'
21439 5' -56 NC_004812.1 + 113511 0.66 0.90454
Target:  5'- --cGugGAgGCCGUggccuCGGCGGACGagaCGCu -3'
miRNA:   3'- aaaCugCU-CGGCG-----GCUGCCUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 97161 0.66 0.90454
Target:  5'- gUUGAUcgccgGGGUCGUCGugGGGguCGUCGUc -3'
miRNA:   3'- aAACUG-----CUCGGCGGCugCCU--GUAGCG- -5'
21439 5' -56 NC_004812.1 + 75448 0.66 0.90454
Target:  5'- --cGGcCGGGUCGCCGcggagGCGGACGgucUGCu -3'
miRNA:   3'- aaaCU-GCUCGGCGGC-----UGCCUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 125705 0.66 0.90454
Target:  5'- ---cGCGcGCCGCCGGgggaGGGCccggGUCGCg -3'
miRNA:   3'- aaacUGCuCGGCGGCUg---CCUG----UAGCG- -5'
21439 5' -56 NC_004812.1 + 68575 0.66 0.90454
Target:  5'- --gGACGGGaCCGCgGG-GGACGcCGCc -3'
miRNA:   3'- aaaCUGCUC-GGCGgCUgCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 140857 0.66 0.90454
Target:  5'- --cGACGuGCCGCaGGCGcGCAaggCGCg -3'
miRNA:   3'- aaaCUGCuCGGCGgCUGCcUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 12386 0.66 0.90454
Target:  5'- -aUGGCGAGCaucgagcugaUGCCGuaguCGGcguuCGUCGCc -3'
miRNA:   3'- aaACUGCUCG----------GCGGCu---GCCu---GUAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.