miRNA display CGI


Results 81 - 100 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 25898 0.66 0.903292
Target:  5'- --cGGCGcccgcgcccagcGCCGCgGGCGcGCGUCGCg -3'
miRNA:   3'- aaaCUGCu-----------CGGCGgCUGCcUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 106027 0.66 0.900767
Target:  5'- --cGGCGAucccggccuGCCGCCGGCGcucGGCcacgaggcuccagcgGUCGCg -3'
miRNA:   3'- aaaCUGCU---------CGGCGGCUGC---CUG---------------UAGCG- -5'
21439 5' -56 NC_004812.1 + 78406 0.66 0.898206
Target:  5'- --cGACGcGCaugacccuCGCCGACGuGGCggCGCa -3'
miRNA:   3'- aaaCUGCuCG--------GCGGCUGC-CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 63385 0.66 0.898206
Target:  5'- cUUGGCGgccagGGCCGCCuGGuCGGACuuuuUCaGCg -3'
miRNA:   3'- aAACUGC-----UCGGCGG-CU-GCCUGu---AG-CG- -5'
21439 5' -56 NC_004812.1 + 121457 0.66 0.898206
Target:  5'- --cGA-GGGCCcCuCGACGGACGUgCGCc -3'
miRNA:   3'- aaaCUgCUCGGcG-GCUGCCUGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 39391 0.66 0.898206
Target:  5'- --aGAuCGAGCgGCCGGCGGc---CGCc -3'
miRNA:   3'- aaaCU-GCUCGgCGGCUGCCuguaGCG- -5'
21439 5' -56 NC_004812.1 + 44209 0.66 0.898206
Target:  5'- --cGGCGGcGgCGCgGACGGGCGaaCGCg -3'
miRNA:   3'- aaaCUGCU-CgGCGgCUGCCUGUa-GCG- -5'
21439 5' -56 NC_004812.1 + 89270 0.66 0.898206
Target:  5'- --gGACGcgcaGGCCGCgGcGCGGcgcggagccccgGCGUCGCg -3'
miRNA:   3'- aaaCUGC----UCGGCGgC-UGCC------------UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 142065 0.66 0.898206
Target:  5'- --cGACGAGcCCGCCcccGCGG---UCGCg -3'
miRNA:   3'- aaaCUGCUC-GGCGGc--UGCCuguAGCG- -5'
21439 5' -56 NC_004812.1 + 138712 0.66 0.898206
Target:  5'- --gGACGAccGCgGCgCGGCGGGCc-CGCg -3'
miRNA:   3'- aaaCUGCU--CGgCG-GCUGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 6202 0.66 0.898206
Target:  5'- --gGGCGcccGGCgGCCcGCGGACGcCGCc -3'
miRNA:   3'- aaaCUGC---UCGgCGGcUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 41635 0.66 0.898206
Target:  5'- -cUGACGucAG-CGCCGAgGccGACGUCGCc -3'
miRNA:   3'- aaACUGC--UCgGCGGCUgC--CUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 8490 0.66 0.898206
Target:  5'- --aGAuCGAGCgGCCGGCGGc---CGCc -3'
miRNA:   3'- aaaCU-GCUCGgCGGCUGCCuguaGCG- -5'
21439 5' -56 NC_004812.1 + 84637 0.66 0.898206
Target:  5'- -cUGGCGAcGCCGCgccaGACGGcCAccaCGCu -3'
miRNA:   3'- aaACUGCU-CGGCGg---CUGCCuGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 37103 0.66 0.898206
Target:  5'- --gGGCGcccGGCgGCCcGCGGACGcCGCc -3'
miRNA:   3'- aaaCUGC---UCGgCGGcUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 96699 0.66 0.898206
Target:  5'- --gGugGA-CCG-CGACGGGCA-CGCg -3'
miRNA:   3'- aaaCugCUcGGCgGCUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 100830 0.66 0.89756
Target:  5'- -cUGACGAccgcgggGCUGCCcAgGGGCAgggCGCg -3'
miRNA:   3'- aaACUGCU-------CGGCGGcUgCCUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 3230 0.66 0.894295
Target:  5'- --cGGCGGGCCgaaggcgcggccggaGCCGGgcuCGGGCGggcCGCa -3'
miRNA:   3'- aaaCUGCUCGG---------------CGGCU---GCCUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 125656 0.66 0.891641
Target:  5'- -gUGGCGccgcGCCGCCGcgcccGCGGcccGCcgCGCg -3'
miRNA:   3'- aaACUGCu---CGGCGGC-----UGCC---UGuaGCG- -5'
21439 5' -56 NC_004812.1 + 123757 0.66 0.891641
Target:  5'- -gUGACGAugcacCCGuccccCCGACGGGCGgagCGCc -3'
miRNA:   3'- aaACUGCUc----GGC-----GGCUGCCUGUa--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.