miRNA display CGI


Results 101 - 120 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 26763 0.66 0.891641
Target:  5'- ---cAUGAGCCGCCGcuACG-ACcgCGCg -3'
miRNA:   3'- aaacUGCUCGGCGGC--UGCcUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 123757 0.66 0.891641
Target:  5'- -gUGACGAugcacCCGuccccCCGACGGGCGgagCGCc -3'
miRNA:   3'- aaACUGCUc----GGC-----GGCUGCCUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 147 0.66 0.891641
Target:  5'- -gUGGCGccgcGCCGCCGcgcccGCGGcccGCcgCGCg -3'
miRNA:   3'- aaACUGCu---CGGCGGC-----UGCC---UGuaGCG- -5'
21439 5' -56 NC_004812.1 + 61921 0.66 0.891641
Target:  5'- --cGcACGcGCCGCCGcGCGGGC-UCGg -3'
miRNA:   3'- aaaC-UGCuCGGCGGC-UGCCUGuAGCg -5'
21439 5' -56 NC_004812.1 + 112564 0.66 0.891641
Target:  5'- --gGGCGcGCCGuCCGACGcGCAggugacgCGCg -3'
miRNA:   3'- aaaCUGCuCGGC-GGCUGCcUGUa------GCG- -5'
21439 5' -56 NC_004812.1 + 114477 0.66 0.891641
Target:  5'- --gGGCGuGGCCGCCGggggaagggcgGCGGGCGaCGg -3'
miRNA:   3'- aaaCUGC-UCGGCGGC-----------UGCCUGUaGCg -5'
21439 5' -56 NC_004812.1 + 90011 0.66 0.891641
Target:  5'- --cGugGAGCgGCCcGCGGGCcggcgAUCGa -3'
miRNA:   3'- aaaCugCUCGgCGGcUGCCUG-----UAGCg -5'
21439 5' -56 NC_004812.1 + 9768 0.66 0.891641
Target:  5'- ---cGCG-GCgCGCCGGCGG-CcgCGCg -3'
miRNA:   3'- aaacUGCuCG-GCGGCUGCCuGuaGCG- -5'
21439 5' -56 NC_004812.1 + 48651 0.66 0.891641
Target:  5'- --gGGCG-GCUGUaCGugGGcCAUCGCc -3'
miRNA:   3'- aaaCUGCuCGGCG-GCugCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 56536 0.66 0.891641
Target:  5'- --cGACGAGCC-CCGACcccACcgCGCc -3'
miRNA:   3'- aaaCUGCUCGGcGGCUGcc-UGuaGCG- -5'
21439 5' -56 NC_004812.1 + 79164 0.66 0.891641
Target:  5'- --gGugGuGUCgGCCGGCGGACAggucuUCGa -3'
miRNA:   3'- aaaCugCuCGG-CGGCUGCCUGU-----AGCg -5'
21439 5' -56 NC_004812.1 + 106715 0.66 0.891641
Target:  5'- -cUGcGCGuGCUGCUGGCGGGCGaggGCg -3'
miRNA:   3'- aaAC-UGCuCGGCGGCUGCCUGUag-CG- -5'
21439 5' -56 NC_004812.1 + 46793 0.66 0.891641
Target:  5'- --cGGuCGAGCCGgUGcUGGGCAUCGa -3'
miRNA:   3'- aaaCU-GCUCGGCgGCuGCCUGUAGCg -5'
21439 5' -56 NC_004812.1 + 90643 0.66 0.891641
Target:  5'- gUUGACGAGCgagcgCGCCa--GGuccuCGUCGCg -3'
miRNA:   3'- aAACUGCUCG-----GCGGcugCCu---GUAGCG- -5'
21439 5' -56 NC_004812.1 + 125656 0.66 0.891641
Target:  5'- -gUGGCGccgcGCCGCCGcgcccGCGGcccGCcgCGCg -3'
miRNA:   3'- aaACUGCu---CGGCGGC-----UGCC---UGuaGCG- -5'
21439 5' -56 NC_004812.1 + 152271 0.66 0.891641
Target:  5'- ---cAUGAGCCGCCGcuACG-ACcgCGCg -3'
miRNA:   3'- aaacUGCUCGGCGGC--UGCcUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 25326 0.67 0.886227
Target:  5'- --cGGCGAGCgcgucgccaccaGCCGGCGGugGgcggcgaccacgggcUCGCc -3'
miRNA:   3'- aaaCUGCUCGg-----------CGGCUGCCugU---------------AGCG- -5'
21439 5' -56 NC_004812.1 + 116156 0.67 0.884851
Target:  5'- --aGACGGGCCGCCcGuACGccccgcucuGCGUUGCg -3'
miRNA:   3'- aaaCUGCUCGGCGG-C-UGCc--------UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 124766 0.67 0.884851
Target:  5'- -cUGugGAGCCGgCGcuCGGuC-UCGCu -3'
miRNA:   3'- aaACugCUCGGCgGCu-GCCuGuAGCG- -5'
21439 5' -56 NC_004812.1 + 26984 0.67 0.884851
Target:  5'- --cGACGAGggccCCGCCGGCgccggggaGGACGgcccCGCc -3'
miRNA:   3'- aaaCUGCUC----GGCGGCUG--------CCUGUa---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.