miRNA display CGI


Results 121 - 140 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 54197 0.67 0.884851
Target:  5'- -aUGACGcuugagacGCCGCCcGCGGGCgcuuccGUCGUg -3'
miRNA:   3'- aaACUGCu-------CGGCGGcUGCCUG------UAGCG- -5'
21439 5' -56 NC_004812.1 + 10573 0.67 0.884851
Target:  5'- --cGGCGAGCggUGCCGG-GGGCAUuuaUGCg -3'
miRNA:   3'- aaaCUGCUCG--GCGGCUgCCUGUA---GCG- -5'
21439 5' -56 NC_004812.1 + 135498 0.67 0.884851
Target:  5'- --aGGCccaGGCCGCCGACacggaGGAgGUCGg -3'
miRNA:   3'- aaaCUGc--UCGGCGGCUG-----CCUgUAGCg -5'
21439 5' -56 NC_004812.1 + 116156 0.67 0.884851
Target:  5'- --aGACGGGCCGCCcGuACGccccgcucuGCGUUGCg -3'
miRNA:   3'- aaaCUGCUCGGCGG-C-UGCc--------UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 94312 0.67 0.884851
Target:  5'- cUUGGuCGccGGCUGCgCGGCGGugAcCGCg -3'
miRNA:   3'- aAACU-GC--UCGGCG-GCUGCCugUaGCG- -5'
21439 5' -56 NC_004812.1 + 2477 0.67 0.884851
Target:  5'- ----cCGGGgCGCCGGCGGcgGCGgccUCGCg -3'
miRNA:   3'- aaacuGCUCgGCGGCUGCC--UGU---AGCG- -5'
21439 5' -56 NC_004812.1 + 152493 0.67 0.884851
Target:  5'- --cGACGAGggccCCGCCGGCgccggggaGGACGgcccCGCc -3'
miRNA:   3'- aaaCUGCUC----GGCGGCUG--------CCUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 149023 0.67 0.884851
Target:  5'- --cGGCGGcGCCggcuuuauGCCGGCGGugGggGCg -3'
miRNA:   3'- aaaCUGCU-CGG--------CGGCUGCCugUagCG- -5'
21439 5' -56 NC_004812.1 + 127985 0.67 0.884851
Target:  5'- ----cCGGGgCGCCGGCGGcgGCGgccUCGCg -3'
miRNA:   3'- aaacuGCUCgGCGGCUGCC--UGU---AGCG- -5'
21439 5' -56 NC_004812.1 + 112993 0.67 0.884851
Target:  5'- --cGGCGccgcGGCCGCCGAggcagaGGACGcagaCGCg -3'
miRNA:   3'- aaaCUGC----UCGGCGGCUg-----CCUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 108344 0.67 0.884851
Target:  5'- -cUGucgcuuCGAGCgCGCgGACG-ACGUCGCc -3'
miRNA:   3'- aaACu-----GCUCG-GCGgCUGCcUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 104269 0.67 0.884851
Target:  5'- ---aACGAcCCGCCGggGCGGGCcgCGUa -3'
miRNA:   3'- aaacUGCUcGGCGGC--UGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 49224 0.67 0.884851
Target:  5'- --gGGCGGuGCCGuCCGAgGcGAUcgCGCg -3'
miRNA:   3'- aaaCUGCU-CGGC-GGCUgC-CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 26984 0.67 0.884851
Target:  5'- --cGACGAGggccCCGCCGGCgccggggaGGACGgcccCGCc -3'
miRNA:   3'- aaaCUGCUC----GGCGGCUG--------CCUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 23515 0.67 0.884851
Target:  5'- --cGGCGGcGCCggcuuuauGCCGGCGGugGggGCg -3'
miRNA:   3'- aaaCUGCU-CGG--------CGGCUGCCugUagCG- -5'
21439 5' -56 NC_004812.1 + 141520 0.67 0.884851
Target:  5'- --aGGCGcucgGGCUcgaGCCGGCGGGCggcgacguGUCGCc -3'
miRNA:   3'- aaaCUGC----UCGG---CGGCUGCCUG--------UAGCG- -5'
21439 5' -56 NC_004812.1 + 85082 0.67 0.884159
Target:  5'- --cGACGccagggaGGCCGCCGA-GGcCGUcCGCa -3'
miRNA:   3'- aaaCUGC-------UCGGCGGCUgCCuGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 154974 0.67 0.877838
Target:  5'- --gGGCGGGCCGCgCG--GGACccgCGCg -3'
miRNA:   3'- aaaCUGCUCGGCG-GCugCCUGua-GCG- -5'
21439 5' -56 NC_004812.1 + 74081 0.67 0.877838
Target:  5'- ---cGCGGGCCGCCu-CGGcccGCAUCaGCa -3'
miRNA:   3'- aaacUGCUCGGCGGcuGCC---UGUAG-CG- -5'
21439 5' -56 NC_004812.1 + 75257 0.67 0.877838
Target:  5'- ---cACG-GCCGCCcuGGCGGGCcugCGCg -3'
miRNA:   3'- aaacUGCuCGGCGG--CUGCCUGua-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.