miRNA display CGI


Results 141 - 160 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 3766 0.67 0.877838
Target:  5'- --cGGCGGcGCCGgCGACGaGGCugacggCGCg -3'
miRNA:   3'- aaaCUGCU-CGGCgGCUGC-CUGua----GCG- -5'
21439 5' -56 NC_004812.1 + 39999 0.67 0.877838
Target:  5'- --aGGCGAGCgGCCGcgacagACGcGGCGgccCGCg -3'
miRNA:   3'- aaaCUGCUCGgCGGC------UGC-CUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 152536 0.67 0.877838
Target:  5'- --aGGCGGcGCgGCCGGCGGAgGaggaGCg -3'
miRNA:   3'- aaaCUGCU-CGgCGGCUGCCUgUag--CG- -5'
21439 5' -56 NC_004812.1 + 138264 0.67 0.877838
Target:  5'- --cGGCGGccgcggucGCgCGCCGcgcccugcggGCGGugGUCGCg -3'
miRNA:   3'- aaaCUGCU--------CG-GCGGC----------UGCCugUAGCG- -5'
21439 5' -56 NC_004812.1 + 27137 0.67 0.877838
Target:  5'- --cGGCGAccugGCCGCCGugccCGGGCuggcggccgCGCg -3'
miRNA:   3'- aaaCUGCU----CGGCGGCu---GCCUGua-------GCG- -5'
21439 5' -56 NC_004812.1 + 152646 0.67 0.877838
Target:  5'- --cGGCGAccugGCCGCCGugccCGGGCuggcggccgCGCg -3'
miRNA:   3'- aaaCUGCU----CGGCGGCu---GCCUGua-------GCG- -5'
21439 5' -56 NC_004812.1 + 121635 0.67 0.877838
Target:  5'- --aGGCGGcGCgGCCGGCGGAgGaggaGCg -3'
miRNA:   3'- aaaCUGCU-CGgCGGCUGCCUgUag--CG- -5'
21439 5' -56 NC_004812.1 + 109429 0.67 0.877838
Target:  5'- --cGGCGGGCCcccgaggcccGCCGAgGGAgAgggcggCGCg -3'
miRNA:   3'- aaaCUGCUCGG----------CGGCUgCCUgUa-----GCG- -5'
21439 5' -56 NC_004812.1 + 5965 0.67 0.877838
Target:  5'- --cGGgGAgGCCGCgGGgGGGCgaGUCGCg -3'
miRNA:   3'- aaaCUgCU-CGGCGgCUgCCUG--UAGCG- -5'
21439 5' -56 NC_004812.1 + 141775 0.67 0.877838
Target:  5'- --cGGCGucgaacGGCCGCgCGgggggGCGGGCcgCGCg -3'
miRNA:   3'- aaaCUGC------UCGGCG-GC-----UGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 79868 0.67 0.877838
Target:  5'- --cGACG-GCCGacaCGGCGG-CcgCGCu -3'
miRNA:   3'- aaaCUGCuCGGCg--GCUGCCuGuaGCG- -5'
21439 5' -56 NC_004812.1 + 143383 0.67 0.877838
Target:  5'- -cUGACGA-CCGC--GCGGAUcgCGCa -3'
miRNA:   3'- aaACUGCUcGGCGgcUGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 18356 0.67 0.877838
Target:  5'- --cGACcgcGGCCGCCG-CGG-CGUaCGCg -3'
miRNA:   3'- aaaCUGc--UCGGCGGCuGCCuGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 126254 0.67 0.877838
Target:  5'- --cGcCGAGCgGCuCGACGcGACGcCGCu -3'
miRNA:   3'- aaaCuGCUCGgCG-GCUGC-CUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 18349 0.67 0.877838
Target:  5'- --cGGCGcgcgaccgcGGCCGCCG-CGG-CGUaCGCg -3'
miRNA:   3'- aaaCUGC---------UCGGCGGCuGCCuGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 129274 0.67 0.877838
Target:  5'- --cGGCGGcGCCGgCGACGaGGCugacggCGCg -3'
miRNA:   3'- aaaCUGCU-CGGCgGCUGC-CUGua----GCG- -5'
21439 5' -56 NC_004812.1 + 154974 0.67 0.877838
Target:  5'- --gGGCGGGCCGCgCG--GGACccgCGCg -3'
miRNA:   3'- aaaCUGCUCGGCG-GCugCCUGua-GCG- -5'
21439 5' -56 NC_004812.1 + 46349 0.67 0.873525
Target:  5'- ---cACGAGCCGCCcugcugcagguaaacGAUGG-CGUUGCc -3'
miRNA:   3'- aaacUGCUCGGCGG---------------CUGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 77152 0.67 0.870607
Target:  5'- --gGGCGGgcccccGCCGCCGcGCGGAaggCGCc -3'
miRNA:   3'- aaaCUGCU------CGGCGGC-UGCCUguaGCG- -5'
21439 5' -56 NC_004812.1 + 49421 0.67 0.870607
Target:  5'- -gUGGCcccGGGCCGCCGcgucgUGGACAugUCGUc -3'
miRNA:   3'- aaACUG---CUCGGCGGCu----GCCUGU--AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.