miRNA display CGI


Results 161 - 180 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 32083 0.67 0.870607
Target:  5'- --cGugGGGCCcgGCCc-CGGAgGUCGCc -3'
miRNA:   3'- aaaCugCUCGG--CGGcuGCCUgUAGCG- -5'
21439 5' -56 NC_004812.1 + 49421 0.67 0.870607
Target:  5'- -gUGGCcccGGGCCGCCGcgucgUGGACAugUCGUc -3'
miRNA:   3'- aaACUG---CUCGGCGGCu----GCCUGU--AGCG- -5'
21439 5' -56 NC_004812.1 + 125327 0.67 0.870607
Target:  5'- --gGGCGGGgCGCCG-CGGGaugCGCc -3'
miRNA:   3'- aaaCUGCUCgGCGGCuGCCUguaGCG- -5'
21439 5' -56 NC_004812.1 + 125254 0.67 0.870607
Target:  5'- --aGGCGcGCCGgCGGCccGGGC-UCGCg -3'
miRNA:   3'- aaaCUGCuCGGCgGCUG--CCUGuAGCG- -5'
21439 5' -56 NC_004812.1 + 155157 0.67 0.870607
Target:  5'- --cGGCGucGCCGCCGugccCGGcCcUCGCg -3'
miRNA:   3'- aaaCUGCu-CGGCGGCu---GCCuGuAGCG- -5'
21439 5' -56 NC_004812.1 + 124376 0.67 0.870607
Target:  5'- --cGGCGGaCCGCCcGCGGACcgccCGCg -3'
miRNA:   3'- aaaCUGCUcGGCGGcUGCCUGua--GCG- -5'
21439 5' -56 NC_004812.1 + 77152 0.67 0.870607
Target:  5'- --gGGCGGgcccccGCCGCCGcGCGGAaggCGCc -3'
miRNA:   3'- aaaCUGCU------CGGCGGC-UGCCUguaGCG- -5'
21439 5' -56 NC_004812.1 + 4858 0.67 0.870607
Target:  5'- --cGGCGGcGCgGCCGugaaGCGGcccgugGCGUCGCg -3'
miRNA:   3'- aaaCUGCU-CGgCGGC----UGCC------UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 156228 0.67 0.870607
Target:  5'- --gGGCGGGgCGCCG-CGGGaugCGCc -3'
miRNA:   3'- aaaCUGCUCgGCGGCuGCCUguaGCG- -5'
21439 5' -56 NC_004812.1 + 130366 0.67 0.870607
Target:  5'- --cGGCGGcGCgGCCGugaaGCGGcccgugGCGUCGCg -3'
miRNA:   3'- aaaCUGCU-CGgCGGC----UGCC------UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 156155 0.67 0.870607
Target:  5'- --aGGCGcGCCGgCGGCccGGGC-UCGCg -3'
miRNA:   3'- aaaCUGCuCGGCgGCUG--CCUGuAGCG- -5'
21439 5' -56 NC_004812.1 + 155277 0.67 0.870607
Target:  5'- --cGGCGGaCCGCCcGCGGACcgccCGCg -3'
miRNA:   3'- aaaCUGCUcGGCGGcUGCCUGua--GCG- -5'
21439 5' -56 NC_004812.1 + 133580 0.67 0.870607
Target:  5'- --cGGCGucCUGCCGGCGG-CGguagCGCg -3'
miRNA:   3'- aaaCUGCucGGCGGCUGCCuGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 29649 0.67 0.870607
Target:  5'- --cGGCGucGCCGCCGugccCGGcCcUCGCg -3'
miRNA:   3'- aaaCUGCu-CGGCGGCu---GCCuGuAGCG- -5'
21439 5' -56 NC_004812.1 + 13858 0.67 0.863164
Target:  5'- --cGGCGGGUagugcagcaGCuCGACGGACccGUCGUa -3'
miRNA:   3'- aaaCUGCUCGg--------CG-GCUGCCUG--UAGCG- -5'
21439 5' -56 NC_004812.1 + 100373 0.67 0.863164
Target:  5'- --cGGCGcccGCCGCCGGgGGGCG-CGa -3'
miRNA:   3'- aaaCUGCu--CGGCGGCUgCCUGUaGCg -5'
21439 5' -56 NC_004812.1 + 65073 0.67 0.863164
Target:  5'- --cGGCG-GCCGCCGcCGcccuGGCcgCGCg -3'
miRNA:   3'- aaaCUGCuCGGCGGCuGC----CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 95532 0.67 0.863164
Target:  5'- --cGGCGGgGCgGCCcg-GGGCGUCGCg -3'
miRNA:   3'- aaaCUGCU-CGgCGGcugCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 83378 0.67 0.863164
Target:  5'- --gGGCGGGCCGCCcgcccGACccgcaGGGCGgcCGCg -3'
miRNA:   3'- aaaCUGCUCGGCGG-----CUG-----CCUGUa-GCG- -5'
21439 5' -56 NC_004812.1 + 48599 0.67 0.863164
Target:  5'- --cGACGcGGCCGCgGccaucCGGACGaCGCg -3'
miRNA:   3'- aaaCUGC-UCGGCGgCu----GCCUGUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.