miRNA display CGI


Results 41 - 60 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 7691 0.68 0.847663
Target:  5'- --cGcCGAcGCCGCCGGacgcccgucgcCGGACGcUCGCc -3'
miRNA:   3'- aaaCuGCU-CGGCGGCU-----------GCCUGU-AGCG- -5'
21439 5' -56 NC_004812.1 + 8490 0.66 0.898206
Target:  5'- --aGAuCGAGCgGCCGGCGGc---CGCc -3'
miRNA:   3'- aaaCU-GCUCGgCGGCUGCCuguaGCG- -5'
21439 5' -56 NC_004812.1 + 8595 0.66 0.92214
Target:  5'- -gUGGCGcGCCGCC--CGGAgGcCGCg -3'
miRNA:   3'- aaACUGCuCGGCGGcuGCCUgUaGCG- -5'
21439 5' -56 NC_004812.1 + 9768 0.66 0.891641
Target:  5'- ---cGCG-GCgCGCCGGCGG-CcgCGCg -3'
miRNA:   3'- aaacUGCuCG-GCGGCUGCCuGuaGCG- -5'
21439 5' -56 NC_004812.1 + 10573 0.67 0.884851
Target:  5'- --cGGCGAGCggUGCCGG-GGGCAUuuaUGCg -3'
miRNA:   3'- aaaCUGCUCG--GCGGCUgCCUGUA---GCG- -5'
21439 5' -56 NC_004812.1 + 10714 0.66 0.914774
Target:  5'- --aGGCG-GCCGCCGuucccuccacgcucGCGGuCcUCGCc -3'
miRNA:   3'- aaaCUGCuCGGCGGC--------------UGCCuGuAGCG- -5'
21439 5' -56 NC_004812.1 + 10868 0.68 0.809156
Target:  5'- --cGACGAGCCccccgacccgcgggcGCUGgacGCGGACcacGUCGCc -3'
miRNA:   3'- aaaCUGCUCGG---------------CGGC---UGCCUG---UAGCG- -5'
21439 5' -56 NC_004812.1 + 10943 0.69 0.796731
Target:  5'- --gGACGAGCUcggucggcgccaGCUcACGGACAccaUCGCa -3'
miRNA:   3'- aaaCUGCUCGG------------CGGcUGCCUGU---AGCG- -5'
21439 5' -56 NC_004812.1 + 10991 0.68 0.82804
Target:  5'- -cUGGCGcGCC-CCGGCGGACcacggguccgccuUCGCc -3'
miRNA:   3'- aaACUGCuCGGcGGCUGCCUGu------------AGCG- -5'
21439 5' -56 NC_004812.1 + 11986 0.72 0.619827
Target:  5'- --gGGCGGGguuCCGCCGGCGGGCuccggucucCGCg -3'
miRNA:   3'- aaaCUGCUC---GGCGGCUGCCUGua-------GCG- -5'
21439 5' -56 NC_004812.1 + 12030 0.68 0.831384
Target:  5'- --cGGCGuccggcagcacGCaCGCCGACG-ACGUCGCg -3'
miRNA:   3'- aaaCUGCu----------CG-GCGGCUGCcUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 12386 0.66 0.90454
Target:  5'- -aUGGCGAGCaucgagcugaUGCCGuaguCGGcguuCGUCGCc -3'
miRNA:   3'- aaACUGCUCG----------GCGGCu---GCCu---GUAGCG- -5'
21439 5' -56 NC_004812.1 + 13140 0.71 0.660604
Target:  5'- --gGugGuGCCGCCGGCG-ACAgcgacgCGCg -3'
miRNA:   3'- aaaCugCuCGGCGGCUGCcUGUa-----GCG- -5'
21439 5' -56 NC_004812.1 + 13858 0.67 0.863164
Target:  5'- --cGGCGGGUagugcagcaGCuCGACGGACccGUCGUa -3'
miRNA:   3'- aaaCUGCUCGg--------CG-GCUGCCUG--UAGCG- -5'
21439 5' -56 NC_004812.1 + 14282 0.66 0.910642
Target:  5'- --cGGCG-GUCGCCGAaucaguaGGGCG-CGCc -3'
miRNA:   3'- aaaCUGCuCGGCGGCUg------CCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 14409 0.66 0.916509
Target:  5'- --cGACGA--CGCCGGCGGcCAgcccCGCg -3'
miRNA:   3'- aaaCUGCUcgGCGGCUGCCuGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 15127 0.76 0.417373
Target:  5'- --cGGCGGcGCCcCCGACGGcgACGUCGCa -3'
miRNA:   3'- aaaCUGCU-CGGcGGCUGCC--UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 15181 0.72 0.589313
Target:  5'- -gUGGCGcGCCGCCcucCGGGCcUCGCu -3'
miRNA:   3'- aaACUGCuCGGCGGcu-GCCUGuAGCG- -5'
21439 5' -56 NC_004812.1 + 15967 0.68 0.831384
Target:  5'- --cGugGcGCCGCCG-CGcGGCggCGCg -3'
miRNA:   3'- aaaCugCuCGGCGGCuGC-CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 16136 0.73 0.579194
Target:  5'- --cGACGcAGCUGCgCGACcgGGACAUCGa -3'
miRNA:   3'- aaaCUGC-UCGGCG-GCUG--CCUGUAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.