miRNA display CGI


Results 61 - 80 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 16833 0.66 0.921588
Target:  5'- --aGACGgcGGCCGCCGcccuuagGCGcGCgGUCGCg -3'
miRNA:   3'- aaaCUGC--UCGGCGGC-------UGCcUG-UAGCG- -5'
21439 5' -56 NC_004812.1 + 16860 0.69 0.787677
Target:  5'- --gGGCGGGCCccgggaCCGGCGuGGCccGUCGCg -3'
miRNA:   3'- aaaCUGCUCGGc-----GGCUGC-CUG--UAGCG- -5'
21439 5' -56 NC_004812.1 + 17050 0.71 0.660604
Target:  5'- --gGGCGccucggucccGGCCGCCG-CGGACG-CGCc -3'
miRNA:   3'- aaaCUGC----------UCGGCGGCuGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 17481 0.7 0.750161
Target:  5'- --cGGCGGauGCCGCgGuggcgcuccCGGACGUCGCc -3'
miRNA:   3'- aaaCUGCU--CGGCGgCu--------GCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 17579 0.69 0.759717
Target:  5'- --aGGgGGuccucGCCGCCGGCuGGGCGUCGg -3'
miRNA:   3'- aaaCUgCU-----CGGCGGCUG-CCUGUAGCg -5'
21439 5' -56 NC_004812.1 + 18080 0.74 0.500105
Target:  5'- --aGAcCGAGCCGCCGucCGGGCcgcCGCa -3'
miRNA:   3'- aaaCU-GCUCGGCGGCu-GCCUGua-GCG- -5'
21439 5' -56 NC_004812.1 + 18093 0.69 0.756861
Target:  5'- --gGGCGAGCCGUCGugGuACGUgugggaguagcggcCGCa -3'
miRNA:   3'- aaaCUGCUCGGCGGCugCcUGUA--------------GCG- -5'
21439 5' -56 NC_004812.1 + 18349 0.67 0.877838
Target:  5'- --cGGCGcgcgaccgcGGCCGCCG-CGG-CGUaCGCg -3'
miRNA:   3'- aaaCUGC---------UCGGCGGCuGCCuGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 18356 0.67 0.877838
Target:  5'- --cGACcgcGGCCGCCG-CGG-CGUaCGCg -3'
miRNA:   3'- aaaCUGc--UCGGCGGCuGCCuGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 18488 0.66 0.916509
Target:  5'- --gGACGAGggGCgGAgGGGCGUCGa -3'
miRNA:   3'- aaaCUGCUCggCGgCUgCCUGUAGCg -5'
21439 5' -56 NC_004812.1 + 21053 0.66 0.916509
Target:  5'- --cGACGAucuCCGCCgGGCuGACGUCGg -3'
miRNA:   3'- aaaCUGCUc--GGCGG-CUGcCUGUAGCg -5'
21439 5' -56 NC_004812.1 + 21142 0.68 0.805636
Target:  5'- -gUGGCGuGCCG-CGGCGGGgGUCucgGCg -3'
miRNA:   3'- aaACUGCuCGGCgGCUGCCUgUAG---CG- -5'
21439 5' -56 NC_004812.1 + 21750 0.73 0.569112
Target:  5'- --gGGCGucuGCCGCCGACGcGcCGUCGg -3'
miRNA:   3'- aaaCUGCu--CGGCGGCUGC-CuGUAGCg -5'
21439 5' -56 NC_004812.1 + 22675 0.66 0.92214
Target:  5'- --cGGCggGAGCC-CCGAgCGGACccCGCg -3'
miRNA:   3'- aaaCUG--CUCGGcGGCU-GCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 22815 0.68 0.847663
Target:  5'- --cGAgGGGCUGaauCCGACGGACucggcGUCGUu -3'
miRNA:   3'- aaaCUgCUCGGC---GGCUGCCUG-----UAGCG- -5'
21439 5' -56 NC_004812.1 + 22974 0.66 0.92214
Target:  5'- --cGGCGAcGCUgauGCUGGCGGugGcCGCc -3'
miRNA:   3'- aaaCUGCU-CGG---CGGCUGCCugUaGCG- -5'
21439 5' -56 NC_004812.1 + 23025 0.71 0.680889
Target:  5'- --cGGCGcgcuaccGCCGCCGGCaGGACGcCGCc -3'
miRNA:   3'- aaaCUGCu------CGGCGGCUG-CCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 23397 0.73 0.559075
Target:  5'- --gGGCGAGCgucCGgCGACGGGCGUCcgGCg -3'
miRNA:   3'- aaaCUGCUCG---GCgGCUGCCUGUAG--CG- -5'
21439 5' -56 NC_004812.1 + 23458 0.7 0.750161
Target:  5'- ---aGCGGGUCGUCGGCGaGGCG-CGCg -3'
miRNA:   3'- aaacUGCUCGGCGGCUGC-CUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 23483 0.66 0.910642
Target:  5'- -cUGGCG-GUgGUCGAgGGGCugcuGUCGCa -3'
miRNA:   3'- aaACUGCuCGgCGGCUgCCUG----UAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.