miRNA display CGI


Results 81 - 100 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 23515 0.67 0.884851
Target:  5'- --cGGCGGcGCCggcuuuauGCCGGCGGugGggGCg -3'
miRNA:   3'- aaaCUGCU-CGG--------CGGCUGCCugUagCG- -5'
21439 5' -56 NC_004812.1 + 23542 0.7 0.740501
Target:  5'- --cGGCGccaucGCCGCCGcCGG-CAUCGUc -3'
miRNA:   3'- aaaCUGCu----CGGCGGCuGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 23623 0.7 0.740501
Target:  5'- -gUGGCcGGgCGCCcaGACGGGCGUcCGCg -3'
miRNA:   3'- aaACUGcUCgGCGG--CUGCCUGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 25093 0.68 0.847663
Target:  5'- --gGGCGGcGCCGCCGcGCGccGACG-CGCg -3'
miRNA:   3'- aaaCUGCU-CGGCGGC-UGC--CUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 25157 0.72 0.616769
Target:  5'- --gGGCgGAGCCGCCGGucgcccccgcgcucCGGggcgGCGUCGCg -3'
miRNA:   3'- aaaCUG-CUCGGCGGCU--------------GCC----UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 25199 0.7 0.710995
Target:  5'- --cGGCGGcuccGcCCGCCGGCGGACGggGUa -3'
miRNA:   3'- aaaCUGCU----C-GGCGGCUGCCUGUagCG- -5'
21439 5' -56 NC_004812.1 + 25326 0.67 0.886227
Target:  5'- --cGGCGAGCgcgucgccaccaGCCGGCGGugGgcggcgaccacgggcUCGCc -3'
miRNA:   3'- aaaCUGCUCGg-----------CGGCUGCCugU---------------AGCG- -5'
21439 5' -56 NC_004812.1 + 25528 0.7 0.720909
Target:  5'- --cGACGGGCCGCCGcgaacgcCGGACccCGa -3'
miRNA:   3'- aaaCUGCUCGGCGGCu------GCCUGuaGCg -5'
21439 5' -56 NC_004812.1 + 25780 0.74 0.48105
Target:  5'- --gGGCGGcGCC-CCGGCGGACGaCGCg -3'
miRNA:   3'- aaaCUGCU-CGGcGGCUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 25898 0.66 0.903292
Target:  5'- --cGGCGcccgcgcccagcGCCGCgGGCGcGCGUCGCg -3'
miRNA:   3'- aaaCUGCu-----------CGGCGgCUGCcUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 26255 0.68 0.839617
Target:  5'- --cGGcCGcGCCGCCG-CGGGCcgUGCc -3'
miRNA:   3'- aaaCU-GCuCGGCGGCuGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 26358 0.66 0.910642
Target:  5'- --cGcCGAGCCGCCGccccCGGGg--CGCg -3'
miRNA:   3'- aaaCuGCUCGGCGGCu---GCCUguaGCG- -5'
21439 5' -56 NC_004812.1 + 26452 0.68 0.831384
Target:  5'- --cGGCGcuacgaGGCCGCCGGCGcGcCcgCGCc -3'
miRNA:   3'- aaaCUGC------UCGGCGGCUGC-CuGuaGCG- -5'
21439 5' -56 NC_004812.1 + 26722 0.66 0.916509
Target:  5'- --aGGCGcGUCGCaCGGCGGGCcgUGg -3'
miRNA:   3'- aaaCUGCuCGGCG-GCUGCCUGuaGCg -5'
21439 5' -56 NC_004812.1 + 26763 0.66 0.891641
Target:  5'- ---cAUGAGCCGCCGcuACG-ACcgCGCg -3'
miRNA:   3'- aaacUGCUCGGCGGC--UGCcUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 26836 0.69 0.769161
Target:  5'- -cUGGCGcgcgagaacGCCGCCGcgGCGGGCGcCGCc -3'
miRNA:   3'- aaACUGCu--------CGGCGGC--UGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 26984 0.67 0.884851
Target:  5'- --cGACGAGggccCCGCCGGCgccggggaGGACGgcccCGCc -3'
miRNA:   3'- aaaCUGCUC----GGCGGCUG--------CCUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 27137 0.67 0.877838
Target:  5'- --cGGCGAccugGCCGCCGugccCGGGCuggcggccgCGCg -3'
miRNA:   3'- aaaCUGCU----CGGCGGCu---GCCUGua-------GCG- -5'
21439 5' -56 NC_004812.1 + 27194 0.68 0.814386
Target:  5'- --gGACGGcccGCCGCagCGACGcGGCGUCaGCg -3'
miRNA:   3'- aaaCUGCU---CGGCG--GCUGC-CUGUAG-CG- -5'
21439 5' -56 NC_004812.1 + 27596 0.66 0.910642
Target:  5'- -----gGGGCCGCCGGCcccGGGCccgCGCc -3'
miRNA:   3'- aaacugCUCGGCGGCUG---CCUGua-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.