miRNA display CGI


Results 101 - 120 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 27751 0.66 0.910042
Target:  5'- ---aGCGGGCCGCCcgcggcccgcaggGGCGGGCGgcccaGCc -3'
miRNA:   3'- aaacUGCUCGGCGG-------------CUGCCUGUag---CG- -5'
21439 5' -56 NC_004812.1 + 28273 0.72 0.609637
Target:  5'- --cGAgGAgugGCCgGCCGACGGGCccgccGUCGCg -3'
miRNA:   3'- aaaCUgCU---CGG-CGGCUGCCUG-----UAGCG- -5'
21439 5' -56 NC_004812.1 + 28576 0.66 0.916509
Target:  5'- --cGGCcGGCaGCUGGCGGACGaCGUg -3'
miRNA:   3'- aaaCUGcUCGgCGGCUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 28927 0.7 0.750161
Target:  5'- --cGACGAcGCCGCCGcCuGGAgGUgGCc -3'
miRNA:   3'- aaaCUGCU-CGGCGGCuG-CCUgUAgCG- -5'
21439 5' -56 NC_004812.1 + 28933 0.67 0.855514
Target:  5'- ---cGCGGaauGCCGCCcGgGGACGUCGUg -3'
miRNA:   3'- aaacUGCU---CGGCGGcUgCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 29107 0.66 0.916509
Target:  5'- ---aGCGA-CCGCCGGCGGGaccCGCc -3'
miRNA:   3'- aaacUGCUcGGCGGCUGCCUguaGCG- -5'
21439 5' -56 NC_004812.1 + 29466 0.67 0.877838
Target:  5'- --gGGCGGGCCGCgCG--GGACccgCGCg -3'
miRNA:   3'- aaaCUGCUCGGCG-GCugCCUGua-GCG- -5'
21439 5' -56 NC_004812.1 + 29649 0.67 0.870607
Target:  5'- --cGGCGucGCCGCCGugccCGGcCcUCGCg -3'
miRNA:   3'- aaaCUGCu-CGGCGGCu---GCCuGuAGCG- -5'
21439 5' -56 NC_004812.1 + 30364 0.68 0.805636
Target:  5'- --cGuCGAGCCGCuCGGCGGccGgGUCGg -3'
miRNA:   3'- aaaCuGCUCGGCG-GCUGCC--UgUAGCg -5'
21439 5' -56 NC_004812.1 + 30464 0.68 0.847663
Target:  5'- gUUGACGcuGCgGaCGugGGuCGUCGCg -3'
miRNA:   3'- aAACUGCu-CGgCgGCugCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 30524 0.7 0.701014
Target:  5'- --gGGCcggGGGCCGCgCcgcgggacgGGCGGGCGUCGCg -3'
miRNA:   3'- aaaCUG---CUCGGCG-G---------CUGCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 30627 0.75 0.444048
Target:  5'- -gUGACGGGCCGC--GCGGACGcggggCGCg -3'
miRNA:   3'- aaACUGCUCGGCGgcUGCCUGUa----GCG- -5'
21439 5' -56 NC_004812.1 + 30691 0.74 0.508788
Target:  5'- --gGACGAGCCGCCacacgaaGAUGGAguUgGCg -3'
miRNA:   3'- aaaCUGCUCGGCGG-------CUGCCUguAgCG- -5'
21439 5' -56 NC_004812.1 + 30946 0.78 0.292928
Target:  5'- --cGGCGGGCCGCgGGCGcGGCggCGCg -3'
miRNA:   3'- aaaCUGCUCGGCGgCUGC-CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 31357 0.7 0.720909
Target:  5'- --cGAgccCGGGCCGCCGGCGcGccuGCGUgCGCa -3'
miRNA:   3'- aaaCU---GCUCGGCGGCUGC-C---UGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 31480 0.72 0.619827
Target:  5'- --cGugGAGCCGCgGGCGcGGCuccgguagCGCg -3'
miRNA:   3'- aaaCugCUCGGCGgCUGC-CUGua------GCG- -5'
21439 5' -56 NC_004812.1 + 31598 0.67 0.855514
Target:  5'- --gGACGGGCCGCgCGcCGcGCAggggCGCc -3'
miRNA:   3'- aaaCUGCUCGGCG-GCuGCcUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 31629 0.7 0.720909
Target:  5'- --cGGCGcGGUCGCCGGCGGGgGUgggggcggCGCg -3'
miRNA:   3'- aaaCUGC-UCGGCGGCUGCCUgUA--------GCG- -5'
21439 5' -56 NC_004812.1 + 32083 0.67 0.870607
Target:  5'- --cGugGGGCCcgGCCc-CGGAgGUCGCc -3'
miRNA:   3'- aaaCugCUCGG--CGGcuGCCUgUAGCG- -5'
21439 5' -56 NC_004812.1 + 32601 0.74 0.519486
Target:  5'- -gUGuACGGGUcguaggCGCCG-CGGGCGUCGCa -3'
miRNA:   3'- aaAC-UGCUCG------GCGGCuGCCUGUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.