miRNA display CGI


Results 121 - 140 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 33452 0.67 0.855514
Target:  5'- --cGACGAcGCCGCCGcCGu-CGUCGa -3'
miRNA:   3'- aaaCUGCU-CGGCGGCuGCcuGUAGCg -5'
21439 5' -56 NC_004812.1 + 33491 0.69 0.787677
Target:  5'- --cGACGccgccGCCGCCGACGG-CAcCGg -3'
miRNA:   3'- aaaCUGCu----CGGCGGCUGCCuGUaGCg -5'
21439 5' -56 NC_004812.1 + 33764 0.7 0.744377
Target:  5'- ---uGCGGGCCcucacgggcucggcgGCCGACG-ACAUCGCc -3'
miRNA:   3'- aaacUGCUCGG---------------CGGCUGCcUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 33996 0.68 0.847663
Target:  5'- ---uGCGAGCCGcCCGGCGGcuCggUGCu -3'
miRNA:   3'- aaacUGCUCGGC-GGCUGCCu-GuaGCG- -5'
21439 5' -56 NC_004812.1 + 34421 0.68 0.805636
Target:  5'- -gUGGCccGUCGCCG--GGGCGUCGCg -3'
miRNA:   3'- aaACUGcuCGGCGGCugCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 35641 0.7 0.740501
Target:  5'- gUUGACGuGCCGCgGgcgcgcGCGGGgGUCGg -3'
miRNA:   3'- aAACUGCuCGGCGgC------UGCCUgUAGCg -5'
21439 5' -56 NC_004812.1 + 35813 0.66 0.916509
Target:  5'- -----gGGGCCGUgGGgcUGGGCGUCGCc -3'
miRNA:   3'- aaacugCUCGGCGgCU--GCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 35917 0.66 0.921588
Target:  5'- --cGACGAGCuCGCgcucccgGGCGGccgcuugaacugcACGUCGCu -3'
miRNA:   3'- aaaCUGCUCG-GCGg------CUGCC-------------UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 36372 0.69 0.759717
Target:  5'- --gGGCGcAGCCGaaGACGGGCAgggGCu -3'
miRNA:   3'- aaaCUGC-UCGGCggCUGCCUGUag-CG- -5'
21439 5' -56 NC_004812.1 + 36726 0.68 0.805636
Target:  5'- --cGGCGGGCUcugcggGCCGGCGG-CG-CGCu -3'
miRNA:   3'- aaaCUGCUCGG------CGGCUGCCuGUaGCG- -5'
21439 5' -56 NC_004812.1 + 37025 0.7 0.750161
Target:  5'- --cGGCGGGCUGCCGgggaagGCGGGCGagGg -3'
miRNA:   3'- aaaCUGCUCGGCGGC------UGCCUGUagCg -5'
21439 5' -56 NC_004812.1 + 37103 0.66 0.898206
Target:  5'- --gGGCGcccGGCgGCCcGCGGACGcCGCc -3'
miRNA:   3'- aaaCUGC---UCGgCGGcUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 37460 0.7 0.710995
Target:  5'- ---cGCGAGUCGCuuaggcaagaaCGGCGGGCGUCuGCg -3'
miRNA:   3'- aaacUGCUCGGCG-----------GCUGCCUGUAG-CG- -5'
21439 5' -56 NC_004812.1 + 37690 0.7 0.720909
Target:  5'- --gGGCGAGCCGUgccuCGGgGGGCG-CGCc -3'
miRNA:   3'- aaaCUGCUCGGCG----GCUgCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 37918 0.66 0.92214
Target:  5'- -cUGACGAGCacuGCgUGACGaGGCG-CGCc -3'
miRNA:   3'- aaACUGCUCGg--CG-GCUGC-CUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 39041 0.77 0.335935
Target:  5'- -gUGACGAgcacGCCGUCGACGGGCcgccCGCg -3'
miRNA:   3'- aaACUGCU----CGGCGGCUGCCUGua--GCG- -5'
21439 5' -56 NC_004812.1 + 39094 0.71 0.690976
Target:  5'- --cGGCacGGCCaCCGACGGccGCGUCGCg -3'
miRNA:   3'- aaaCUGc-UCGGcGGCUGCC--UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 39391 0.66 0.898206
Target:  5'- --aGAuCGAGCgGCCGGCGGc---CGCc -3'
miRNA:   3'- aaaCU-GCUCGgCGGCUGCCuguaGCG- -5'
21439 5' -56 NC_004812.1 + 39496 0.66 0.92214
Target:  5'- -gUGGCGcGCCGCC--CGGAgGcCGCg -3'
miRNA:   3'- aaACUGCuCGGCGGcuGCCUgUaGCG- -5'
21439 5' -56 NC_004812.1 + 39531 0.75 0.426156
Target:  5'- --gGAUGGGCUGCuCGACGGGgugcgggcCGUCGCg -3'
miRNA:   3'- aaaCUGCUCGGCG-GCUGCCU--------GUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.