miRNA display CGI


Results 141 - 160 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 39999 0.67 0.877838
Target:  5'- --aGGCGAGCgGCCGcgacagACGcGGCGgccCGCg -3'
miRNA:   3'- aaaCUGCUCGgCGGC------UGC-CUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 40087 0.7 0.710995
Target:  5'- --cGGCGGGCgGCgGGCGGcCGggcgCGCg -3'
miRNA:   3'- aaaCUGCUCGgCGgCUGCCuGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 41117 0.68 0.839617
Target:  5'- -gUGAggcCGGGCCGCCGcccggcGCGGccGCAcgCGCg -3'
miRNA:   3'- aaACU---GCUCGGCGGC------UGCC--UGUa-GCG- -5'
21439 5' -56 NC_004812.1 + 41635 0.66 0.898206
Target:  5'- -cUGACGucAG-CGCCGAgGccGACGUCGCc -3'
miRNA:   3'- aaACUGC--UCgGCGGCUgC--CUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 41960 0.67 0.863164
Target:  5'- -gUGGCGGGCCGCacCGACGuccuCAUCa- -3'
miRNA:   3'- aaACUGCUCGGCG--GCUGCcu--GUAGcg -5'
21439 5' -56 NC_004812.1 + 42583 0.74 0.497225
Target:  5'- --cGACGcGCgCGCCGACGGcgagaccgugcugcGCAUCGUa -3'
miRNA:   3'- aaaCUGCuCG-GCGGCUGCC--------------UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 42715 0.68 0.831384
Target:  5'- ---cGCGGGCCGCgGGCGGuuggcCGCg -3'
miRNA:   3'- aaacUGCUCGGCGgCUGCCugua-GCG- -5'
21439 5' -56 NC_004812.1 + 43319 0.7 0.710995
Target:  5'- ---uGCGuGCCGCCGAagggcUGGuGCAUCGCc -3'
miRNA:   3'- aaacUGCuCGGCGGCU-----GCC-UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 43522 0.66 0.910642
Target:  5'- --cGugGGuCCGCCGcgGCGG-UGUCGCg -3'
miRNA:   3'- aaaCugCUcGGCGGC--UGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 43625 0.69 0.791315
Target:  5'- --cGGCGGccGCggcgccgcgauccauCGCCGcCGGACGUCGCc -3'
miRNA:   3'- aaaCUGCU--CG---------------GCGGCuGCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 43829 0.72 0.609637
Target:  5'- --gGGgGAGCCGCCG-CGcGGC-UCGCg -3'
miRNA:   3'- aaaCUgCUCGGCGGCuGC-CUGuAGCG- -5'
21439 5' -56 NC_004812.1 + 43870 0.72 0.609637
Target:  5'- --cGGCGGcGCCGCCGcGCGGu--UCGCg -3'
miRNA:   3'- aaaCUGCU-CGGCGGC-UGCCuguAGCG- -5'
21439 5' -56 NC_004812.1 + 44209 0.66 0.898206
Target:  5'- --cGGCGGcGgCGCgGACGGGCGaaCGCg -3'
miRNA:   3'- aaaCUGCU-CgGCGgCUGCCUGUa-GCG- -5'
21439 5' -56 NC_004812.1 + 44901 0.68 0.834699
Target:  5'- ---cGCGAGCuCGCCGuggcccagaucgccaGCGGccACGUCGCc -3'
miRNA:   3'- aaacUGCUCG-GCGGC---------------UGCC--UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 45079 0.69 0.769161
Target:  5'- --cGGCGuccgggggaaAGCCgGCCGGCGGGCGgggggCGUg -3'
miRNA:   3'- aaaCUGC----------UCGG-CGGCUGCCUGUa----GCG- -5'
21439 5' -56 NC_004812.1 + 45308 0.66 0.92214
Target:  5'- gUUGGCGGGCagGCCGAgcaGGGCGgucUUGUu -3'
miRNA:   3'- aAACUGCUCGg-CGGCUg--CCUGU---AGCG- -5'
21439 5' -56 NC_004812.1 + 45727 0.72 0.609637
Target:  5'- --gGACGGccuGCCGCCgGGCGGGCucCGCg -3'
miRNA:   3'- aaaCUGCU---CGGCGG-CUGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 46292 0.7 0.710995
Target:  5'- --gGGCGgccggaGGCCG-CGGCGGGCcgCGCg -3'
miRNA:   3'- aaaCUGC------UCGGCgGCUGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 46349 0.67 0.873525
Target:  5'- ---cACGAGCCGCCcugcugcagguaaacGAUGG-CGUUGCc -3'
miRNA:   3'- aaacUGCUCGGCGG---------------CUGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 46793 0.66 0.891641
Target:  5'- --cGGuCGAGCCGgUGcUGGGCAUCGa -3'
miRNA:   3'- aaaCU-GCUCGGCgGCuGCCUGUAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.