miRNA display CGI


Results 161 - 180 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 46913 0.72 0.609637
Target:  5'- --cGGCGGccGCCGCCGcgGCGGACAcaucCGCc -3'
miRNA:   3'- aaaCUGCU--CGGCGGC--UGCCUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 47607 0.73 0.529288
Target:  5'- --cGAcccCGAGCgCGCCGACGGGC-UCGg -3'
miRNA:   3'- aaaCU---GCUCG-GCGGCUGCCUGuAGCg -5'
21439 5' -56 NC_004812.1 + 48094 0.69 0.786764
Target:  5'- --cGGCG-GCCGCCGccgugcgccccguGCGGGCGcuggCGCc -3'
miRNA:   3'- aaaCUGCuCGGCGGC-------------UGCCUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 48346 0.71 0.670762
Target:  5'- --cGGCGGacGCCGCCGagggcuccgccGCGGACGcCGCc -3'
miRNA:   3'- aaaCUGCU--CGGCGGC-----------UGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 48599 0.67 0.863164
Target:  5'- --cGACGcGGCCGCgGccaucCGGACGaCGCg -3'
miRNA:   3'- aaaCUGC-UCGGCGgCu----GCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 48651 0.66 0.891641
Target:  5'- --gGGCG-GCUGUaCGugGGcCAUCGCc -3'
miRNA:   3'- aaaCUGCuCGGCG-GCugCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 48957 0.7 0.701014
Target:  5'- --cGGCGAGCC-UCGACGGGgcCGUCGa -3'
miRNA:   3'- aaaCUGCUCGGcGGCUGCCU--GUAGCg -5'
21439 5' -56 NC_004812.1 + 48997 0.67 0.884851
Target:  5'- ---aAUGcGCCGCCuGGCGGACA-CGUg -3'
miRNA:   3'- aaacUGCuCGGCGG-CUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 49063 0.68 0.805636
Target:  5'- --gGACaAGuCCGCCGACGugcuCGUCGCc -3'
miRNA:   3'- aaaCUGcUC-GGCGGCUGCcu--GUAGCG- -5'
21439 5' -56 NC_004812.1 + 49168 0.7 0.750161
Target:  5'- --cGGCGAGuCCG-CGACGGccGCcgCGCg -3'
miRNA:   3'- aaaCUGCUC-GGCgGCUGCC--UGuaGCG- -5'
21439 5' -56 NC_004812.1 + 49224 0.67 0.884851
Target:  5'- --gGGCGGuGCCGuCCGAgGcGAUcgCGCg -3'
miRNA:   3'- aaaCUGCU-CGGC-GGCUgC-CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 49421 0.67 0.870607
Target:  5'- -gUGGCcccGGGCCGCCGcgucgUGGACAugUCGUc -3'
miRNA:   3'- aaACUG---CUCGGCGGCu----GCCUGU--AGCG- -5'
21439 5' -56 NC_004812.1 + 50083 0.69 0.759717
Target:  5'- -gUGACGAaggcgccgcgGCCGCCGGCGccccGCGcCGCg -3'
miRNA:   3'- aaACUGCU----------CGGCGGCUGCc---UGUaGCG- -5'
21439 5' -56 NC_004812.1 + 50574 0.66 0.92214
Target:  5'- -gUGGcCGAG-CGCCGGCGG-CAggccgggaUCGCc -3'
miRNA:   3'- aaACU-GCUCgGCGGCUGCCuGU--------AGCG- -5'
21439 5' -56 NC_004812.1 + 51097 0.66 0.910042
Target:  5'- -aUGACG-GCCgcacacccacucgGCCGcCGGGCccgGUCGCc -3'
miRNA:   3'- aaACUGCuCGG-------------CGGCuGCCUG---UAGCG- -5'
21439 5' -56 NC_004812.1 + 51396 0.73 0.579194
Target:  5'- --aGGCGccGGCCGCCGGCGcGC-UCGCc -3'
miRNA:   3'- aaaCUGC--UCGGCGGCUGCcUGuAGCG- -5'
21439 5' -56 NC_004812.1 + 51656 0.71 0.690976
Target:  5'- gUUGACGucGGCCggGCCG-CGGACcuguuuguGUCGCa -3'
miRNA:   3'- aAACUGC--UCGG--CGGCuGCCUG--------UAGCG- -5'
21439 5' -56 NC_004812.1 + 51747 0.66 0.910642
Target:  5'- --cGACGAccgccgcgGCCGCCGGCGcGGCcaagaGCc -3'
miRNA:   3'- aaaCUGCU--------CGGCGGCUGC-CUGuag--CG- -5'
21439 5' -56 NC_004812.1 + 52103 0.7 0.740501
Target:  5'- --cGACGAccGCCcgucccgcggGCCGAUcGGCAUCGCg -3'
miRNA:   3'- aaaCUGCU--CGG----------CGGCUGcCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 52896 0.66 0.92214
Target:  5'- --cGACGGuGCaggGCuCGA-GGGCGUCGCg -3'
miRNA:   3'- aaaCUGCU-CGg--CG-GCUgCCUGUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.