miRNA display CGI


Results 21 - 40 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 152536 0.67 0.877838
Target:  5'- --aGGCGGcGCgGCCGGCGGAgGaggaGCg -3'
miRNA:   3'- aaaCUGCU-CGgCGGCUGCCUgUag--CG- -5'
21439 5' -56 NC_004812.1 + 152493 0.67 0.884851
Target:  5'- --cGACGAGggccCCGCCGGCgccggggaGGACGgcccCGCc -3'
miRNA:   3'- aaaCUGCUC----GGCGGCUG--------CCUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 152344 0.69 0.769161
Target:  5'- -cUGGCGcgcgagaacGCCGCCGcgGCGGGCGcCGCc -3'
miRNA:   3'- aaACUGCu--------CGGCGGC--UGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 152271 0.66 0.891641
Target:  5'- ---cAUGAGCCGCCGcuACG-ACcgCGCg -3'
miRNA:   3'- aaacUGCUCGGCGGC--UGCcUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 151961 0.68 0.805636
Target:  5'- --cGGCGAGCCccuccCCGcGCGGGCGUCccGCc -3'
miRNA:   3'- aaaCUGCUCGGc----GGC-UGCCUGUAG--CG- -5'
21439 5' -56 NC_004812.1 + 151960 0.68 0.831384
Target:  5'- --cGGCGcuacgaGGCCGCCGGCGcGcCcgCGCc -3'
miRNA:   3'- aaaCUGC------UCGGCGGCUGC-CuGuaGCG- -5'
21439 5' -56 NC_004812.1 + 151866 0.66 0.910642
Target:  5'- --cGcCGAGCCGCCGccccCGGGg--CGCg -3'
miRNA:   3'- aaaCuGCUCGGCGGCu---GCCUguaGCG- -5'
21439 5' -56 NC_004812.1 + 151763 0.68 0.839617
Target:  5'- --cGGcCGcGCCGCCG-CGGGCcgUGCc -3'
miRNA:   3'- aaaCU-GCuCGGCGGCuGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 151288 0.74 0.48105
Target:  5'- --gGGCGGcGCC-CCGGCGGACGaCGCg -3'
miRNA:   3'- aaaCUGCU-CGGcGGCUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 151036 0.7 0.720909
Target:  5'- --cGACGGGCCGCCGcgaacgcCGGACccCGa -3'
miRNA:   3'- aaaCUGCUCGGCGGCu------GCCUGuaGCg -5'
21439 5' -56 NC_004812.1 + 150707 0.7 0.710995
Target:  5'- --cGGCGGcuccGcCCGCCGGCGGACGggGUa -3'
miRNA:   3'- aaaCUGCU----C-GGCGGCUGCCUGUagCG- -5'
21439 5' -56 NC_004812.1 + 150666 0.73 0.566096
Target:  5'- --gGGCgGAGCCGCCGGucgcccccgcgcucCGGGCggcGUCGCg -3'
miRNA:   3'- aaaCUG-CUCGGCGGCU--------------GCCUG---UAGCG- -5'
21439 5' -56 NC_004812.1 + 150602 0.68 0.847663
Target:  5'- --gGGCGGcGCCGCCGcGCGccGACG-CGCg -3'
miRNA:   3'- aaaCUGCU-CGGCGGC-UGC--CUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 150414 0.7 0.740501
Target:  5'- ---cGCGGGCCGCCGGgcgcccCGGGCcucCGCg -3'
miRNA:   3'- aaacUGCUCGGCGGCU------GCCUGua-GCG- -5'
21439 5' -56 NC_004812.1 + 150192 0.68 0.822971
Target:  5'- --gGGCGGGCUGUaCGGCGcgccguaccccGGCGUCGCc -3'
miRNA:   3'- aaaCUGCUCGGCG-GCUGC-----------CUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 149023 0.67 0.884851
Target:  5'- --cGGCGGcGCCggcuuuauGCCGGCGGugGggGCg -3'
miRNA:   3'- aaaCUGCU-CGG--------CGGCUGCCugUagCG- -5'
21439 5' -56 NC_004812.1 + 148966 0.7 0.750161
Target:  5'- ---aGCGGGUCGUCGGCGaGGCG-CGCg -3'
miRNA:   3'- aaacUGCUCGGCGGCUGC-CUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 148905 0.73 0.559075
Target:  5'- --gGGCGAGCgucCGgCGACGGGCGUCcgGCg -3'
miRNA:   3'- aaaCUGCUCG---GCgGCUGCCUGUAG--CG- -5'
21439 5' -56 NC_004812.1 + 148533 0.73 0.539157
Target:  5'- ---cGCGGGCCGCCgGGCGcGGCgggGUCGCg -3'
miRNA:   3'- aaacUGCUCGGCGG-CUGC-CUG---UAGCG- -5'
21439 5' -56 NC_004812.1 + 148250 0.72 0.630027
Target:  5'- --cGGCG-GCCGCCGACgcggugGGGCGgccgCGCc -3'
miRNA:   3'- aaaCUGCuCGGCGGCUG------CCUGUa---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.