miRNA display CGI


Results 41 - 60 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 147546 0.67 0.854737
Target:  5'- --gGACGGGCggcggguuccgggUGCCGGCGcGGCcgCGUa -3'
miRNA:   3'- aaaCUGCUCG-------------GCGGCUGC-CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 146275 0.69 0.782177
Target:  5'- --aGACG-GCCGCCGAUuuucuggugcggaugGGACGgcaGCa -3'
miRNA:   3'- aaaCUGCuCGGCGGCUG---------------CCUGUag-CG- -5'
21439 5' -56 NC_004812.1 + 145304 0.68 0.805636
Target:  5'- -gUGGCGGGCCcgguggGCCGAUG-ACguuGUCGCg -3'
miRNA:   3'- aaACUGCUCGG------CGGCUGCcUG---UAGCG- -5'
21439 5' -56 NC_004812.1 + 144619 0.7 0.750161
Target:  5'- --aGACcgGAGcCCGCCGGCGGAacccCGCc -3'
miRNA:   3'- aaaCUG--CUC-GGCGGCUGCCUgua-GCG- -5'
21439 5' -56 NC_004812.1 + 144058 0.66 0.92214
Target:  5'- --cGGCGGcacGCCGCCGG-GGGCcUgGCg -3'
miRNA:   3'- aaaCUGCU---CGGCGGCUgCCUGuAgCG- -5'
21439 5' -56 NC_004812.1 + 143383 0.67 0.877838
Target:  5'- -cUGACGA-CCGC--GCGGAUcgCGCa -3'
miRNA:   3'- aaACUGCUcGGCGgcUGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 142386 0.66 0.92214
Target:  5'- --cGGCGcgccguGGCCGCCGG-GGGCGggGCc -3'
miRNA:   3'- aaaCUGC------UCGGCGGCUgCCUGUagCG- -5'
21439 5' -56 NC_004812.1 + 142296 0.68 0.814386
Target:  5'- --gGACGAggGCCccggGCCGGCGcGGCGgggCGCg -3'
miRNA:   3'- aaaCUGCU--CGG----CGGCUGC-CUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 142204 0.73 0.579194
Target:  5'- --gGGCuGGCCGCCGGCGu-CGUCGUg -3'
miRNA:   3'- aaaCUGcUCGGCGGCUGCcuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 142065 0.66 0.898206
Target:  5'- --cGACGAGcCCGCCcccGCGG---UCGCg -3'
miRNA:   3'- aaaCUGCUC-GGCGGc--UGCCuguAGCG- -5'
21439 5' -56 NC_004812.1 + 141775 0.67 0.877838
Target:  5'- --cGGCGucgaacGGCCGCgCGgggggGCGGGCcgCGCg -3'
miRNA:   3'- aaaCUGC------UCGGCG-GC-----UGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 141520 0.67 0.884851
Target:  5'- --aGGCGcucgGGCUcgaGCCGGCGGGCggcgacguGUCGCc -3'
miRNA:   3'- aaaCUGC----UCGG---CGGCUGCCUG--------UAGCG- -5'
21439 5' -56 NC_004812.1 + 141482 0.66 0.910642
Target:  5'- --cGACGucGCCGUCGG-GGGCGcCGCc -3'
miRNA:   3'- aaaCUGCu-CGGCGGCUgCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 140857 0.66 0.90454
Target:  5'- --cGACGuGCCGCaGGCGcGCAaggCGCg -3'
miRNA:   3'- aaaCUGCuCGGCGgCUGCcUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 140794 0.69 0.759717
Target:  5'- -aUGAUGAGCCGCaCGAgGcGCGagGCg -3'
miRNA:   3'- aaACUGCUCGGCG-GCUgCcUGUagCG- -5'
21439 5' -56 NC_004812.1 + 140640 0.7 0.730747
Target:  5'- --aGACGcGCCGCCG-CGcGGCggCGCc -3'
miRNA:   3'- aaaCUGCuCGGCGGCuGC-CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 140093 0.76 0.391697
Target:  5'- -gUGAUGAGCgCGCCcauGGCGGGCG-CGCg -3'
miRNA:   3'- aaACUGCUCG-GCGG---CUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 140025 0.69 0.796731
Target:  5'- --cGGCccuGCCGCCcGCGGGCccgGUCGCc -3'
miRNA:   3'- aaaCUGcu-CGGCGGcUGCCUG---UAGCG- -5'
21439 5' -56 NC_004812.1 + 139787 0.69 0.796731
Target:  5'- --cGGCG-GCCGCCGucuccuccucgGCGGGgGUCGa -3'
miRNA:   3'- aaaCUGCuCGGCGGC-----------UGCCUgUAGCg -5'
21439 5' -56 NC_004812.1 + 139323 0.68 0.820413
Target:  5'- --cGGCGAGCCacGCCGagauuuucacgaagGCGGAggcgGUCGCg -3'
miRNA:   3'- aaaCUGCUCGG--CGGC--------------UGCCUg---UAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.