miRNA display CGI


Results 101 - 120 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 129001 0.66 0.92214
Target:  5'- --cGGCGGGCCGCgGgcGCGGGCccGggGCc -3'
miRNA:   3'- aaaCUGCUCGGCGgC--UGCCUG--UagCG- -5'
21439 5' -56 NC_004812.1 + 128949 0.74 0.503956
Target:  5'- --cGGCGccAGCCGCCGcgggggucgggcccgGCGGGCgGUCGCg -3'
miRNA:   3'- aaaCUGC--UCGGCGGC---------------UGCCUG-UAGCG- -5'
21439 5' -56 NC_004812.1 + 128862 0.67 0.884851
Target:  5'- ---uGCGGGCCGCgGGCGGcccGCugacCGCg -3'
miRNA:   3'- aaacUGCUCGGCGgCUGCC---UGua--GCG- -5'
21439 5' -56 NC_004812.1 + 128612 0.69 0.777558
Target:  5'- --gGGCGGgggaggcGCCGCCGAgcuccucgcCGGGCAgcggCGCg -3'
miRNA:   3'- aaaCUGCU-------CGGCGGCU---------GCCUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 128261 0.72 0.589313
Target:  5'- --cGGCGGGCCa---GCGGACGUCGCa -3'
miRNA:   3'- aaaCUGCUCGGcggcUGCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 128029 0.68 0.804753
Target:  5'- --aGGCGcacgucguccgccAGCUGCCGGCcGAaCAUCGCg -3'
miRNA:   3'- aaaCUGC-------------UCGGCGGCUGcCU-GUAGCG- -5'
21439 5' -56 NC_004812.1 + 128027 0.71 0.660604
Target:  5'- --cGGCGcGGCCGUCGagcGCGGGCAgcacggCGCg -3'
miRNA:   3'- aaaCUGC-UCGGCGGC---UGCCUGUa-----GCG- -5'
21439 5' -56 NC_004812.1 + 127985 0.67 0.884851
Target:  5'- ----cCGGGgCGCCGGCGGcgGCGgccUCGCg -3'
miRNA:   3'- aaacuGCUCgGCGGCUGCC--UGU---AGCG- -5'
21439 5' -56 NC_004812.1 + 127910 0.67 0.855514
Target:  5'- --aGACGGGCCGCagCGGCGcGGCcagcccccagCGCg -3'
miRNA:   3'- aaaCUGCUCGGCG--GCUGC-CUGua--------GCG- -5'
21439 5' -56 NC_004812.1 + 127542 0.68 0.822971
Target:  5'- --cGGCGGGCCucgGUCGGCGG-CGgggggCGCg -3'
miRNA:   3'- aaaCUGCUCGG---CGGCUGCCuGUa----GCG- -5'
21439 5' -56 NC_004812.1 + 127504 0.7 0.710995
Target:  5'- --gGGCGGGucCCGCCGGCGG---UCGCu -3'
miRNA:   3'- aaaCUGCUC--GGCGGCUGCCuguAGCG- -5'
21439 5' -56 NC_004812.1 + 127307 0.71 0.670762
Target:  5'- -gUGGCGcGCUGCCGgaagugucgcACGGccGCGUCGCu -3'
miRNA:   3'- aaACUGCuCGGCGGC----------UGCC--UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 126811 0.69 0.769161
Target:  5'- --aGGCGGGgCGCCGAccccCGGGCccCGCc -3'
miRNA:   3'- aaaCUGCUCgGCGGCU----GCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 126254 0.67 0.877838
Target:  5'- --cGcCGAGCgGCuCGACGcGACGcCGCu -3'
miRNA:   3'- aaaCuGCUCGgCG-GCUGC-CUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 125976 0.66 0.910642
Target:  5'- -gUGACG-GCC-CUGACGGGgG-CGCu -3'
miRNA:   3'- aaACUGCuCGGcGGCUGCCUgUaGCG- -5'
21439 5' -56 NC_004812.1 + 125705 0.66 0.90454
Target:  5'- ---cGCGcGCCGCCGGgggaGGGCccggGUCGCg -3'
miRNA:   3'- aaacUGCuCGGCGGCUg---CCUG----UAGCG- -5'
21439 5' -56 NC_004812.1 + 125656 0.66 0.891641
Target:  5'- -gUGGCGccgcGCCGCCGcgcccGCGGcccGCcgCGCg -3'
miRNA:   3'- aaACUGCu---CGGCGGC-----UGCC---UGuaGCG- -5'
21439 5' -56 NC_004812.1 + 125327 0.67 0.870607
Target:  5'- --gGGCGGGgCGCCG-CGGGaugCGCc -3'
miRNA:   3'- aaaCUGCUCgGCGGCuGCCUguaGCG- -5'
21439 5' -56 NC_004812.1 + 125254 0.67 0.870607
Target:  5'- --aGGCGcGCCGgCGGCccGGGC-UCGCg -3'
miRNA:   3'- aaaCUGCuCGGCgGCUG--CCUGuAGCG- -5'
21439 5' -56 NC_004812.1 + 124766 0.67 0.884851
Target:  5'- -cUGugGAGCCGgCGcuCGGuC-UCGCu -3'
miRNA:   3'- aaACugCUCGGCgGCu-GCCuGuAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.