miRNA display CGI


Results 121 - 140 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 124559 0.74 0.519486
Target:  5'- --cGACGAcGCCGa-GGCGGuCAUCGCg -3'
miRNA:   3'- aaaCUGCU-CGGCggCUGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 124376 0.67 0.870607
Target:  5'- --cGGCGGaCCGCCcGCGGACcgccCGCg -3'
miRNA:   3'- aaaCUGCUcGGCGGcUGCCUGua--GCG- -5'
21439 5' -56 NC_004812.1 + 124336 0.68 0.831384
Target:  5'- --gGGCGGGCCGUCGcgcACGG-CGUuUGCa -3'
miRNA:   3'- aaaCUGCUCGGCGGC---UGCCuGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 124240 0.69 0.787677
Target:  5'- --cGGCGGGCCuGgCGGgGGGCG-CGCg -3'
miRNA:   3'- aaaCUGCUCGG-CgGCUgCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 124123 0.78 0.292928
Target:  5'- ---cGCGGuacGCCGCCGACGGGCcgCGCc -3'
miRNA:   3'- aaacUGCU---CGGCGGCUGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 123757 0.66 0.891641
Target:  5'- -gUGACGAugcacCCGuccccCCGACGGGCGgagCGCc -3'
miRNA:   3'- aaACUGCUc----GGC-----GGCUGCCUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 123606 0.72 0.630027
Target:  5'- --gGGCGGGCgGgCGGCGGAgGUcCGCu -3'
miRNA:   3'- aaaCUGCUCGgCgGCUGCCUgUA-GCG- -5'
21439 5' -56 NC_004812.1 + 123274 0.7 0.750161
Target:  5'- gUUGAgGAGCuCGUCGGCGG-CccCGCg -3'
miRNA:   3'- aAACUgCUCG-GCGGCUGCCuGuaGCG- -5'
21439 5' -56 NC_004812.1 + 122728 0.73 0.579194
Target:  5'- -gUGACGGGCCgGCCcaugcgGGCGGGCGggagagggCGCg -3'
miRNA:   3'- aaACUGCUCGG-CGG------CUGCCUGUa-------GCG- -5'
21439 5' -56 NC_004812.1 + 122617 0.7 0.701014
Target:  5'- ----cCGAGCCGCCgGGCGG-C-UCGCa -3'
miRNA:   3'- aaacuGCUCGGCGG-CUGCCuGuAGCG- -5'
21439 5' -56 NC_004812.1 + 122293 0.68 0.830551
Target:  5'- --cGGCGccggagGGCCGCCGgggggagGCGGGCggcgaGUCGCc -3'
miRNA:   3'- aaaCUGC------UCGGCGGC-------UGCCUG-----UAGCG- -5'
21439 5' -56 NC_004812.1 + 121635 0.67 0.877838
Target:  5'- --aGGCGGcGCgGCCGGCGGAgGaggaGCg -3'
miRNA:   3'- aaaCUGCU-CGgCGGCUGCCUgUag--CG- -5'
21439 5' -56 NC_004812.1 + 121457 0.66 0.898206
Target:  5'- --cGA-GGGCCcCuCGACGGACGUgCGCc -3'
miRNA:   3'- aaaCUgCUCGGcG-GCUGCCUGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 121060 0.68 0.805636
Target:  5'- --cGGCGAGCCccuccCCGcGCGGGCGUCccGCc -3'
miRNA:   3'- aaaCUGCUCGGc----GGC-UGCCUGUAG--CG- -5'
21439 5' -56 NC_004812.1 + 119854 0.68 0.831384
Target:  5'- -gUGGCGcuguaccaccAGCUGCgGACGGGCcugcaccccgggGUCGCc -3'
miRNA:   3'- aaACUGC----------UCGGCGgCUGCCUG------------UAGCG- -5'
21439 5' -56 NC_004812.1 + 119513 0.7 0.740501
Target:  5'- ---cGCGGGCCGCCGGgcgcccCGGGCcucCGCg -3'
miRNA:   3'- aaacUGCUCGGCGGCU------GCCUGua-GCG- -5'
21439 5' -56 NC_004812.1 + 119291 0.68 0.822971
Target:  5'- --gGGCGGGCUGUaCGGCGcgccguaccccGGCGUCGCc -3'
miRNA:   3'- aaaCUGCUCGGCG-GCUGC-----------CUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 119051 0.72 0.589313
Target:  5'- -gUGGCGGGCUGCCacaucggcacGGCGGACuuucacCGCa -3'
miRNA:   3'- aaACUGCUCGGCGG----------CUGCCUGua----GCG- -5'
21439 5' -56 NC_004812.1 + 118226 0.68 0.847663
Target:  5'- --cGcCGAGCUcCCGGCGGGCccCGCc -3'
miRNA:   3'- aaaCuGCUCGGcGGCUGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 117715 0.7 0.740501
Target:  5'- -gUGAUGGGCaagGCCGuGCGGAgccucgacgaCGUCGCg -3'
miRNA:   3'- aaACUGCUCGg--CGGC-UGCCU----------GUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.